RetrogeneDB ID: | retro_eeur_511 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_332070:9937..10284(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJC19 | ||
Ensembl ID: | ENSEEUG00000006955 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528] |
Percent Identity: | 72.27 % |
Parental protein coverage: | 98.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | STVVAVGLTIAAAGFAGRYVLQAMKHVEPQVKQVFQSLPKSAFSGGYYRG-GFEPKMTKRE-AALILGVS |
STVVA.G.T.AA..FAG.YVLQAMKHV.PQVK.VFQSL.KSAFSGGYYRG.G..PK...R.....ILGVS | |
Retrocopy | STVVAGGPTTAATEFAGCYVLQAMKHVKPQVK*VFQSLLKSAFSGGYYRG>GLNPK*QNRK>NTKILGVS |
Parental | PTANKGK-IREAHRRIMLL-NHPD-KGGSPYIAAKINEAKDLLEGQAKK |
PTANKGK.I..AH..IML..N.P..KGGSPYI.A.I.EAKDLLEGQAKK | |
Retrocopy | PTANKGK>IKDAHCQIMLS>NRPE>KGGSPYITAQISEAKDLLEGQAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .82 RPM |
SRP017611_liver | 0 .16 RPM | 16 .08 RPM |