Parental gene:

DNAJC19, ENSSSCG00000011770

Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:HGNC Symbol;Acc:30528]
Organism:Pig (Sus scrofa)
Coordinates:13:128249032..128255007(-)


>ENSSSCG00000011770
ATGGCTAGTACAGTGGTAGCAGTTGGACTGACCATTGCTGCTGCAGGATTTGCAGGCCGTTACGCTTTACAAGCCATGAA
GCATATGGAACCTCAAGTAAAACAAGTTTTTCAAAGTCTACCAAAATCTGCCTTCAGTGGTGGCTATTACAGAGGTGGGT
TTGAACCCAAGATGACAAAACGGGAAGCAGCATTGATACTAGGTGTAAGCCCTACTGCCAATAAAGGAAAAATAAGAGAT
GCTCATCGACGAATTATGCTTTTAAATCACCCAGACAAGGGAGGATCTCCTTATATAGCGGCCAAAATCAATGAAGCTAA
AGATTTACTAGAAGGTCAAGCTAAAAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .17 RPM
SRP014902_testis 13 .15 RPM
SRP018288_heart 62 .05 RPM
SRP018288_kidney 68 .26 RPM
SRP018288_liver 54 .05 RPM
SRP018288_lung 14 .56 RPM
SRP018856_adipose 23 .90 RPM
SRP035408_brain 42 .56 RPM
SRP035408_liver 56 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000023513 ortholog_one2many 1 retrogene
retro_btau_127,
Callithrix jacchus ENSCJAG00000012795 possible_ortholog 10 retrogenes
retro_cjac_1008, retro_cjac_1192, retro_cjac_1364, retro_cjac_1430, retro_cjac_1550, retro_cjac_252, retro_cjac_2609, retro_cjac_2890, retro_cjac_3060, retro_cjac_914,
Cavia porcellus ENSCPOG00000021198 possible_ortholog 1 retrogene
retro_cpor_126,
Dasypus novemcinctus ENSDNOG00000019067 possible_ortholog 1 retrogene
retro_dnov_49,
Erinaceus europaeus ENSEEUG00000006955 possible_ortholog 9 retrogenes
retro_eeur_221, retro_eeur_230, retro_eeur_309, retro_eeur_455, retro_eeur_48, retro_eeur_511, retro_eeur_596, retro_eeur_74, retro_eeur_94,
Echinops telfairi ENSETEG00000006897 possible_ortholog 7 retrogenes
retro_etel_1071, retro_etel_1222, retro_etel_1559, retro_etel_275, retro_etel_384, retro_etel_81, retro_etel_821,
Ficedula albicollis ENSFALG00000008296 ortholog_one2one 1 retrogene
retro_falb_28,
Gallus gallus ENSGALG00000008852 ortholog_one2one 1 retrogene
retro_ggal_17,
Gorilla gorilla ENSGGOG00000009120 ortholog_one2one 7 retrogenes
retro_ggor_1037, retro_ggor_1483, retro_ggor_1484, retro_ggor_1783, retro_ggor_2365, retro_ggor_491, retro_ggor_517,
Loxodonta africana ENSLAFG00000001910 possible_ortholog 5 retrogenes
retro_lafr_48, retro_lafr_515, retro_lafr_611, retro_lafr_881, retro_lafr_929,
Microcebus murinus ENSMICG00000010381 possible_ortholog 4 retrogenes
retro_mmur_1160, retro_mmur_225, retro_mmur_320, retro_mmur_728,
Myotis lucifugus ENSMLUG00000006865 possible_ortholog 1 retrogene
retro_mluc_84,
Macaca mulatta ENSMMUG00000012104 ortholog_one2one 3 retrogenes
retro_mmul_2142, retro_mmul_2454, retro_mmul_946,
Otolemur garnettii ENSOGAG00000008754 ortholog_one2many 11 retrogenes
retro_ogar_1214, retro_ogar_1334, retro_ogar_138, retro_ogar_1625, retro_ogar_1811, retro_ogar_2012, retro_ogar_2048, retro_ogar_2881, retro_ogar_301, retro_ogar_442, retro_ogar_718,
Pongo abelii ENSPPYG00000014328 ortholog_one2one 2 retrogenes
retro_pabe_2126, retro_pabe_44,
Tupaia belangeri ENSTBEG00000015089 ortholog_one2many 27 retrogenes
retro_tbel_1126, retro_tbel_1166, retro_tbel_1167, retro_tbel_1296, retro_tbel_1301, retro_tbel_1491, retro_tbel_1693, retro_tbel_1780, retro_tbel_2117, retro_tbel_2136, retro_tbel_2267, retro_tbel_2459, retro_tbel_266, retro_tbel_2830, retro_tbel_3233, retro_tbel_3303, retro_tbel_3556, retro_tbel_3716, retro_tbel_3814, retro_tbel_384, retro_tbel_3849, retro_tbel_3963, retro_tbel_4043, retro_tbel_42, retro_tbel_633, retro_tbel_833, retro_tbel_889,
Tarsius syrichta ENSTSYG00000001611 ortholog_one2one 3 retrogenes
retro_tsyr_112, retro_tsyr_174, retro_tsyr_312,
Tursiops truncatus ENSTTRG00000014700 ortholog_one2one 6 retrogenes
retro_ttru_1023, retro_ttru_1630, retro_ttru_1830, retro_ttru_662, retro_ttru_704, retro_ttru_962,
Vicugna pacos ENSVPAG00000003387 ortholog_one2one 1 retrogene
retro_vpac_533,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_651 68.91 100.00
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2. retro_sscr_891 83.62 100.00
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Download FASTA sequences of all ENSSSCG00000011770 retrocopies