Parental gene:

DNAJC19, ENSGALG00000008852

Aliases:None
Description:None
Organism:Chicken (Gallus gallus)
Coordinates:9:16559669..16562902(+)


>ENSGALG00000008852
AGGAGCACGGGGGGAAAAAACGAGCAGCGGGACGGGGCGAGGATGGGAGAGCAAAGAGCATTTCCAAACACAGACGCGTG
CCGTCACAACGTCGGGCACACCGCCGGGACCATGGTGGCGGTCGGGCTGACCATCGCGGCGGCGGGCTTCGCAGGTCGTT
ATGCGCTGAGAGCCATGAAGCAAATGGAGCCCCAGATGAAGCAAGTGCTGCAGAACCTGCCCAAAGCGGACTTCAGTGGT
TATTACAGAGGTGGATTTGAACCCAAAATGACTAAACGAGAAGCAGCCCTAATACTAGGAACTAGCCCTACAGCCAACAG
AAGTAAAATTAGAGAAGCTCATAGACGAATCATGCTTCTGAATCATCCAGATAAAGGTGGTTCTCCATATGTAGCAGCCA
AAATCAATGAAGCTAAAGATTTGCTGGAAGACCAAGCTAAAAAAAAT

Library Parental gene expression (RPM)
SRP007412_brain 9 .34 RPM
SRP007412_cerebellum 6 .92 RPM
SRP007412_heart 11 .78 RPM
SRP007412_kidney 22 .80 RPM
SRP007412_liver 13 .30 RPM
SRP007412_testis 12 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012255 ortholog_one2one 6 retrogenes
retro_amel_1087, retro_amel_155, retro_amel_252, retro_amel_283, retro_amel_744, retro_amel_994,
Bos taurus ENSBTAG00000023513 ortholog_one2many 1 retrogene
retro_btau_127,
Canis familiaris ENSCAFG00000032714 ortholog_one2one 8 retrogenes
retro_cfam_1256, retro_cfam_1306, retro_cfam_1451, retro_cfam_2015, retro_cfam_346, retro_cfam_389, retro_cfam_741, retro_cfam_819,
Callithrix jacchus ENSCJAG00000012795 ortholog_one2many 10 retrogenes
retro_cjac_1008, retro_cjac_1192, retro_cjac_1364, retro_cjac_1430, retro_cjac_1550, retro_cjac_252, retro_cjac_2609, retro_cjac_2890, retro_cjac_3060, retro_cjac_914,
Cavia porcellus ENSCPOG00000021198 ortholog_one2many 1 retrogene
retro_cpor_126,
Dasypus novemcinctus ENSDNOG00000019067 ortholog_one2many 1 retrogene
retro_dnov_49,
Dipodomys ordii ENSDORG00000005862 ortholog_one2one 7 retrogenes
retro_dord_232, retro_dord_295, retro_dord_320, retro_dord_53, retro_dord_586, retro_dord_684, retro_dord_794,
Erinaceus europaeus ENSEEUG00000006955 ortholog_one2many 9 retrogenes
retro_eeur_221, retro_eeur_230, retro_eeur_309, retro_eeur_455, retro_eeur_48, retro_eeur_511, retro_eeur_596, retro_eeur_74, retro_eeur_94,
Echinops telfairi ENSETEG00000006897 ortholog_one2many 7 retrogenes
retro_etel_1071, retro_etel_1222, retro_etel_1559, retro_etel_275, retro_etel_384, retro_etel_81, retro_etel_821,
Ficedula albicollis ENSFALG00000008296 ortholog_one2one 1 retrogene
retro_falb_28,
Felis catus ENSFCAG00000010591 ortholog_one2one 7 retrogenes
retro_fcat_1250, retro_fcat_1481, retro_fcat_1603, retro_fcat_1837, retro_fcat_475, retro_fcat_511, retro_fcat_982,
Homo sapiens ENSG00000205981 ortholog_one2one 8 retrogenes
retro_hsap_1330, retro_hsap_2061, retro_hsap_2062, retro_hsap_2349, retro_hsap_3497, retro_hsap_387, retro_hsap_538, retro_hsap_583,
Gorilla gorilla ENSGGOG00000009120 ortholog_one2one 7 retrogenes
retro_ggor_1037, retro_ggor_1483, retro_ggor_1484, retro_ggor_1783, retro_ggor_2365, retro_ggor_491, retro_ggor_517,
Loxodonta africana ENSLAFG00000001910 ortholog_one2many 5 retrogenes
retro_lafr_48, retro_lafr_515, retro_lafr_611, retro_lafr_881, retro_lafr_929,
Microcebus murinus ENSMICG00000010381 ortholog_one2many 4 retrogenes
retro_mmur_1160, retro_mmur_225, retro_mmur_320, retro_mmur_728,
Myotis lucifugus ENSMLUG00000006865 ortholog_one2many 1 retrogene
retro_mluc_84,
Macaca mulatta ENSMMUG00000012104 ortholog_one2one 3 retrogenes
retro_mmul_2142, retro_mmul_2454, retro_mmul_946,
Mustela putorius furo ENSMPUG00000002336 ortholog_one2one 7 retrogenes
retro_mputfur_1099, retro_mputfur_1652, retro_mputfur_287, retro_mputfur_662, retro_mputfur_841, retro_mputfur_848, retro_mputfur_984,
Mus musculus ENSMUSG00000027679 ortholog_one2one 3 retrogenes
retro_mmus_1446, retro_mmus_3071, retro_mmus_3554,
Oryctolagus cuniculus ENSOCUG00000014043 ortholog_one2one 5 retrogenes
retro_ocun_1100, retro_ocun_1650, retro_ocun_1869, retro_ocun_334, retro_ocun_398,
Otolemur garnettii ENSOGAG00000008754 ortholog_one2many 11 retrogenes
retro_ogar_1214, retro_ogar_1334, retro_ogar_138, retro_ogar_1625, retro_ogar_1811, retro_ogar_2012, retro_ogar_2048, retro_ogar_2881, retro_ogar_301, retro_ogar_442, retro_ogar_718,
Ochotona princeps ENSOPRG00000009256 ortholog_one2one 5 retrogenes
retro_opri_1127, retro_opri_122, retro_opri_440, retro_opri_529, retro_opri_844,
Procavia capensis ENSPCAG00000014950 ortholog_one2one 2 retrogenes
retro_pcap_195, retro_pcap_25,
Pongo abelii ENSPPYG00000014328 ortholog_one2many 2 retrogenes
retro_pabe_2126, retro_pabe_44,
Pan troglodytes ENSPTRG00000030046 ortholog_one2one 7 retrogenes
retro_ptro_1374, retro_ptro_1719, retro_ptro_2370, retro_ptro_2927, retro_ptro_404, retro_ptro_429, retro_ptro_907,
Rattus norvegicus ENSRNOG00000049819 ortholog_one2one 1 retrogene
retro_rnor_2913,
Sus scrofa ENSSSCG00000011770 ortholog_one2one 2 retrogenes
retro_sscr_651, retro_sscr_891,
Ictidomys tridecemlineatus ENSSTOG00000011508 ortholog_one2one 1 retrogene
retro_itri_552,
Tupaia belangeri ENSTBEG00000015089 ortholog_one2many 27 retrogenes
retro_tbel_1126, retro_tbel_1166, retro_tbel_1167, retro_tbel_1296, retro_tbel_1301, retro_tbel_1491, retro_tbel_1693, retro_tbel_1780, retro_tbel_2117, retro_tbel_2136, retro_tbel_2267, retro_tbel_2459, retro_tbel_266, retro_tbel_2830, retro_tbel_3233, retro_tbel_3303, retro_tbel_3556, retro_tbel_3716, retro_tbel_3814, retro_tbel_384, retro_tbel_3849, retro_tbel_3963, retro_tbel_4043, retro_tbel_42, retro_tbel_633, retro_tbel_833, retro_tbel_889,
Tarsius syrichta ENSTSYG00000001611 ortholog_one2one 3 retrogenes
retro_tsyr_112, retro_tsyr_174, retro_tsyr_312,
Tursiops truncatus ENSTTRG00000014700 ortholog_one2one 6 retrogenes
retro_ttru_1023, retro_ttru_1630, retro_ttru_1830, retro_ttru_662, retro_ttru_704, retro_ttru_962,
Vicugna pacos ENSVPAG00000003387 ortholog_one2one 1 retrogene
retro_vpac_533,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggal_17 71.60 53.69
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Download FASTA sequences of all ENSGALG00000008852 retrocopies