RetrogeneDB ID: | retro_vpac_287 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_383:73305..73777(-) | ||
Located in intron of: | ENSVPAG00000004536 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSVPAG00000007421 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 75.47 % |
Parental protein coverage: | 54.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IFANSVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDTNVTRLQLETEIEALKEE |
IFANSVDNARIVLQID.A.LAA.DF.VK.ETELAM.QSVESDIH...KVIDDT.VT.LQLETE.EA.KEE | |
Retrocopy | IFANSVDNARIVLQID-ACLAAADFTVKCETELAMCQSVESDIHRPHKVIDDTSVTHLQLETEMEAFKEE |
Parental | LLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIR-AQYDELARKNREELDKYWSHQIEES |
LLF.KKN.EEEV.GLQNQ.ANSGL.VEL..PKSQDLSKIMADI...QYDE.A.KNREEL.K.WS.Q.E.S | |
Retrocopy | LLFTKKNPEEEVMGLQNQTANSGLIVELAVPKSQDLSKIMADIL>VQYDEIAQKNREELGKCWSQQMEDS |
Parental | TTVVTSQTAEIGAAETTLT |
.TVVT..T..IGAA....T | |
Retrocopy | STVVTLKTTDIGAAQNSTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |