Parental gene:

Krt18, ENSRNOG00000047393

Aliases:Krt18, Krt1-18
Description:Keratin, type I cytoskeletal 18 [Source:UniProtKB/Swiss-Prot;Acc:Q5BJY9]
Organism:Rat (Rattus norvegicus)
Coordinates:7:141425672..141429364(+)


>ENSRNOG00000047393
ATGAGCTTCACCACCCGCTCCACCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTGCGGACTCCCAGCCAGCGGGT
CCGGCCTGCCAGCAGCGCAGCCAGCGTCTATGCAGGTGCTGGGGGCTCAGGGTCCCGGATATCCGTGTCCCGCTCTGTCT
GGGGTGGCTCCGTGGGGTCCGCAGGCCTGGCGGGAATGGGTGGGGTCCAGACTGAGAAGGAGACCATGCAAGACCTGAAC
GACCGCCTGGCCAGCTACCTAGACAAGGTGAAGAACCTGGAAACCGAGAACAGGAGACTAGAGAGCAAAATCCGGGAATA
TCTGGAGAAAAGGGGTCCCCAGGGCGTCAGAGACTGGGGCCACTACTTCAAGACCATCGAAGATCTGAGGGCTCAGATCT
TTGCGAATTCTGTGGACAATGCCCGCATCGTCCTGCAGATCGACAATGCCCGTCTTGCCGCTGATGACTTTAGAGTCAAG
TATGAGACGGAACTGGCCATGCGCCAGTCTGTGGAGAGTGACATTCATGGACTCCGCAAGGTGGTGGATGACACCAACAT
CACGAGGTTGCAGCTGGAGACAGAAATCGAAGCGCTCAAGGAGGAGCTGCTGTTCATGAAGAAGAATCATGAGGAGGAAG
TCCAAGGCCTGGAAGCTCAGATTGCCAGTTCTGGGTTGACTGTGGAAGTGGATGCTCCCAAATCTCAGGACCTCAGCAAG
ATCATGGCGGACATCCGTGCCCAGTATGAACAGCTGGCTCAGAAGAACCGTGAGGAACTGGACAAGTACTGGTCTCAGCA
GATTGAAGAGAGTACCACGGTAGTCACCACCAAGTCTGCCGAAATCAGGGACGCTGAGACCACACTCTTGGAGCTGAGAC
GCACCCTCCAGACCTTGGAGATTGACCTGGACTCGATGAAAAACCAGAACATCAACTTGGAGAACAACCTCGGGGAAGTG
GAGGCCAGATACAGGGTGCAGATGGAGCAACTCAATGGGGTCCTTCTGCATCTGGAATCAGAGCTGGCACAAACTCGGGC
AGAAGGACAGCGCCAGACCCAGGAATACGAAGCCCTGTTGAACATCAAGGTCAAGCTTGAGGCGGAGATTGCCACCTACC
GCCGCTTGCTGGAGGATGGGGACGATTTCAGTCTCAACGACGCCCTGGACTCCAGCAACTCCATGCAAACTGTCCAGAGG
ACAACTACCCGTAAGGTCGTGGATGGCAAAGTGGTGTCCGAGACCAATGATACCAGAGTTCTGAGGCACTAA

Library Parental gene expression (RPM)
SRP017611_liver 93 .12 RPM
SRP017611_kidney 9 .35 RPM
SRP017611_brain 0 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011981 ortholog_one2many 2 retrogenes
Canis familiaris ENSCAFG00000007154 ortholog_many2many 10 retrogenes
Callithrix jacchus ENSCJAG00000018165 possible_ortholog 29 retrogenes
Cavia porcellus ENSCPOG00000002618 ortholog_many2many 1 retrogene
Echinops telfairi ENSETEG00000008130 possible_ortholog 1 retrogene
Homo sapiens ENSG00000111057 possible_ortholog 60 retrogenes
Gorilla gorilla ENSGGOG00000010157 possible_ortholog 28 retrogenes
Macropus eugenii ENSMEUG00000012262 ortholog_one2many 14 retrogenes
Myotis lucifugus ENSMLUG00000022439 ortholog_many2many 8 retrogenes
Macaca mulatta ENSMMUG00000031911 possible_ortholog 4 retrogenes
Mustela putorius furo ENSMPUG00000006369 ortholog_many2many 2 retrogenes
Mus musculus ENSMUSG00000023043 ortholog_one2many 2 retrogenes
Nomascus leucogenys ENSNLEG00000017732 possible_ortholog 45 retrogenes
Oryctolagus cuniculus ENSOCUG00000027691 ortholog_many2many 1 retrogene
Pongo abelii ENSPPYG00000004563 possible_ortholog 60 retrogenes
Pan troglodytes ENSPTRG00000004996 possible_ortholog 58 retrogenes
Pteropus vampyrus ENSPVAG00000009361 ortholog_one2many 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000015587 ortholog_one2many 3 retrogenes
Tursiops truncatus ENSTTRG00000012977 ortholog_one2many 2 retrogenes
Vicugna pacos ENSVPAG00000007421 ortholog_one2many 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_581 75.63 73.29
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2. retro_rnor_1513 97.13 65.96
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3. retro_rnor_2529 75.78 81.32
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Download FASTA sequences of all ENSRNOG00000047393 retrocopies