RetrogeneDB - Parental gene ENSCJAG00000018165 details

							
>ENSCJAG00000018165
ATGAGCTTCACCACCCGCTCCTCCTTTTCCACCAACTACCGGTCCGTGGGCTCCGTCCGGGTGCCCAGCTATGGCGCCCG

GCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCCGGGGGCTCTGGTTCCCGCGTCTCCGTGACGCGCTCCACCAGCG

TCCGGAGCGGCATGGGGGTCGGGGGCCTGGCCGCGGGGATGGCCAGGGGTCTGGCAGGAATGGGAGGCATCCAGAACGAG

AAGGAGACCATGCAAATCCTGAACGACCGCCTGGCCTCCTACCTGGACAGAGTCAGGAGCCTGGAGACCGAGAACCGGAA

GCTGGAGATCAAAATCCGGGAGCACCTGGAGAAGAAGGGACCCCAAGTCAGAGACTGGGGCCATTACTTCAAGACCATCG

AGGACCTGAGGGCTCAGATCTTCTCAAATACTGTGGACAATGCCCGCATCGTTCTGCAGATTGACAATGCTCGTCTTGCT

GCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCAGTCTGTGGAGAGCGACATCCATGGTCTCCGAAA

GGTCATCGATGACACCAATGTCACTCGGCTGCAGCTGGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGA

AGAAGAACCATGAAGAGGAAGTAAATGGCCTACAAGCCCAGATTGCCAGCTCTGGATTGACCGTGGAGGTAGATACCCCC

AAATCTCAGGACCTTGCTAAGATCATGGCAGAAATCCGGGCTCAGTATGACGAGCTGGCTCGGAAGAACCGAGAGGAGCT

GGACAAGTACTGGACTCAGCAGATTGAGGAGAGTACCACAATAGTCACCACACAGTCCACTGAGGTTGAAACTGCTGGGA

TGACACTCACAGAGCTGAGACGTACAGTCCAGTCCTTGGAGATTGACCTGGACTCCATGAGAAATCAGAAGATCAGCTTG

GAGAACAGCCTGAGGGAGGTGGAGGCCCGCTATGCCCTGCAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTGGAGTC

AGAGCTGGCACAGACCCGGGCAGAGGGACAGCGCCAGGCCCAGGAGTACGAGGCTCTGTTGAACATCAAGGTCAAGCTGG

AGGCTGAGATCGCCACCTACCGTCGCCTGCTGGAAGATGGGGAGGACTTCAGTCTCAGTGATGCCTTGAACAGCAGCAGC

AACTCCATGCAAACCATCCAAAAGACGACCACCCGCCGGATAGTGGATGGCAAAGTGGTGTCTGAGACCAACGACACCAA

AGTTCTGAGACATTAG

Library	Parental gene expression (RPM)
SRP051959_spleen	1 .24 RPM
SRP051959_skeletal_muscle	0 .04 RPM
SRP051959_lymph_node	0 .66 RPM
SRP051959_lung	14 .41 RPM
SRP051959_liver	37 .95 RPM
SRP051959_kidney	16 .24 RPM
SRP051959_heart	1 .18 RPM
SRP051959_colon	101 .02 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011981	possible_ortholog	2 retrogenes	retro_amel_1366, retro_amel_1896,
Canis familiaris	ENSCAFG00000007154	possible_ortholog	10 retrogenes	retro_cfam_1045, retro_cfam_1205, retro_cfam_1393, retro_cfam_1413, retro_cfam_1672, retro_cfam_2124, retro_cfam_2170, retro_cfam_611, retro_cfam_698, retro_cfam_883,
Cavia porcellus	ENSCPOG00000002618	possible_ortholog	1 retrogene	retro_cpor_111,
Echinops telfairi	ENSETEG00000008130	possible_ortholog	1 retrogene	retro_etel_1177,
Homo sapiens	ENSG00000111057	ortholog_one2many	60 retrogenes	retro_hsap_1129, retro_hsap_1153, retro_hsap_1226, retro_hsap_1404, retro_hsap_1650, retro_hsap_1774, retro_hsap_1818, retro_hsap_1907, retro_hsap_1981, retro_hsap_2115, retro_hsap_2174, retro_hsap_2242, retro_hsap_2276, retro_hsap_2353, retro_hsap_2361, retro_hsap_2433, retro_hsap_2461, retro_hsap_2517, retro_hsap_2543, retro_hsap_2565, retro_hsap_2571, retro_hsap_2626, retro_hsap_2752, retro_hsap_2848, retro_hsap_2869, retro_hsap_2877, retro_hsap_2915, retro_hsap_2922, retro_hsap_2973, retro_hsap_306, retro_hsap_3098, retro_hsap_3161, retro_hsap_3203, retro_hsap_3227, retro_hsap_3236, retro_hsap_327, retro_hsap_3400, retro_hsap_3452, retro_hsap_3492, retro_hsap_3498, retro_hsap_3567, retro_hsap_3645, retro_hsap_3651, retro_hsap_3948, retro_hsap_4145, retro_hsap_4201, retro_hsap_4215, retro_hsap_4238, retro_hsap_4277, retro_hsap_434, retro_hsap_4681, retro_hsap_4727, retro_hsap_4736, retro_hsap_4756, retro_hsap_483, retro_hsap_4915, retro_hsap_4919, retro_hsap_832, retro_hsap_846, retro_hsap_866,
Gorilla gorilla	ENSGGOG00000010157	ortholog_many2many	28 retrogenes	retro_ggor_1246, retro_ggor_1513, retro_ggor_1606, retro_ggor_1641, retro_ggor_1692, retro_ggor_1725, retro_ggor_1838, retro_ggor_1914, retro_ggor_2024, retro_ggor_2062, retro_ggor_2128, retro_ggor_2201, retro_ggor_2301, retro_ggor_2360, retro_ggor_2407, retro_ggor_2462, retro_ggor_2468, retro_ggor_2653, retro_ggor_2815, retro_ggor_2823, retro_ggor_2903, retro_ggor_2941, retro_ggor_3069, retro_ggor_455, retro_ggor_685, retro_ggor_692, retro_ggor_881, retro_ggor_898,
Macropus eugenii	ENSMEUG00000012262	ortholog_one2many	14 retrogenes	retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus	ENSMLUG00000022439	possible_ortholog	8 retrogenes	retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta	ENSMMUG00000031911	ortholog_many2many	4 retrogenes	retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo	ENSMPUG00000006369	possible_ortholog	2 retrogenes	retro_mputfur_1591, retro_mputfur_171,
Mus musculus	ENSMUSG00000023043	possible_ortholog	2 retrogenes	retro_mmus_1152, retro_mmus_479,
Nomascus leucogenys	ENSNLEG00000017732	ortholog_one2many	45 retrogenes	retro_nleu_1234, retro_nleu_1238, retro_nleu_1252, retro_nleu_1346, retro_nleu_1397, retro_nleu_1421, retro_nleu_1454, retro_nleu_1500, retro_nleu_1547, retro_nleu_1563, retro_nleu_1683, retro_nleu_1801, retro_nleu_1872, retro_nleu_1953, retro_nleu_1960, retro_nleu_2023, retro_nleu_2173, retro_nleu_2293, retro_nleu_2308, retro_nleu_2310, retro_nleu_241, retro_nleu_2494, retro_nleu_2551, retro_nleu_264, retro_nleu_2721, retro_nleu_2807, retro_nleu_2901, retro_nleu_2935, retro_nleu_3008, retro_nleu_3061, retro_nleu_353, retro_nleu_357, retro_nleu_364, retro_nleu_415, retro_nleu_427, retro_nleu_505, retro_nleu_512, retro_nleu_613, retro_nleu_639, retro_nleu_699, retro_nleu_785, retro_nleu_791, retro_nleu_824, retro_nleu_832, retro_nleu_924,
Oryctolagus cuniculus	ENSOCUG00000027691	possible_ortholog	1 retrogene	retro_ocun_58,
Pongo abelii	ENSPPYG00000004563	ortholog_many2many	60 retrogenes	retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Pan troglodytes	ENSPTRG00000004996	ortholog_one2many	58 retrogenes	retro_ptro_1121, retro_ptro_1172, retro_ptro_1188, retro_ptro_1251, retro_ptro_1321, retro_ptro_1405, retro_ptro_1420, retro_ptro_1462, retro_ptro_1482, retro_ptro_1496, retro_ptro_1501, retro_ptro_1586, retro_ptro_1610, retro_ptro_1659, retro_ptro_1721, retro_ptro_1725, retro_ptro_1737, retro_ptro_1772, retro_ptro_1860, retro_ptro_193, retro_ptro_1941, retro_ptro_1946, retro_ptro_1971, retro_ptro_1977, retro_ptro_2010, retro_ptro_2094, retro_ptro_2188, retro_ptro_2244, retro_ptro_2277, retro_ptro_2310, retro_ptro_2341, retro_ptro_2366, retro_ptro_2371, retro_ptro_247, retro_ptro_2470, retro_ptro_2476, retro_ptro_264, retro_ptro_2679, retro_ptro_2817, retro_ptro_2852, retro_ptro_2861, retro_ptro_2881, retro_ptro_2900, retro_ptro_2956, retro_ptro_3079, retro_ptro_3110, retro_ptro_3144, retro_ptro_3150, retro_ptro_3169, retro_ptro_3277, retro_ptro_364, retro_ptro_581, retro_ptro_587, retro_ptro_600, retro_ptro_677, retro_ptro_787, retro_ptro_841, retro_ptro_962,
Pteropus vampyrus	ENSPVAG00000009361	possible_ortholog	2 retrogenes	retro_pvam_140, retro_pvam_557,
Rattus norvegicus	ENSRNOG00000047393	possible_ortholog	3 retrogenes	retro_rnor_1513, retro_rnor_2529, retro_rnor_581,
Ictidomys tridecemlineatus	ENSSTOG00000015587	possible_ortholog	3 retrogenes	retro_itri_1288, retro_itri_1517, retro_itri_1609,
Tursiops truncatus	ENSTTRG00000012977	possible_ortholog	2 retrogenes	retro_ttru_1273, retro_ttru_463,
Vicugna pacos	ENSVPAG00000007421	possible_ortholog	3 retrogenes	retro_vpac_287, retro_vpac_390, retro_vpac_53,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_626	97.24	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_794	80.28	66.13	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_878	95.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_955	75.17	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_1323	84.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_1457	73.67	95.59	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_1638	93.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_1847	85.66	64.50	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_1857	97.22	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_1885	91.90	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_1915	86.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_2074	75.54	95.36	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_2087	94.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_2179	76.52	96.32	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_2232	75.69	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_2252	83.37	98.77	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cjac_2349	85.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cjac_2614	86.15	95.10	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_cjac_2689	82.11	56.61	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_cjac_2842	93.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_cjac_3036	74.39	75.64	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_cjac_3145	65.86	59.56	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_cjac_3995	93.76	100.00	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_cjac_4001	94.88	52.45	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_cjac_4065	92.40	100.00	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_cjac_4120	66.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_cjac_4138	76.85	100.00	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_cjac_4158	97.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_cjac_4200	83.28	67.75	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000018165 retrocopies

Parental gene:	KRT18, ENSCJAG00000018165
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	9:41797514..41801869(+)

Parental gene:

KRT18, ENSCJAG00000018165