RetrogeneDB ID: | retro_cfam_611 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:52462521..52463835(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007154 | ||
Aliases: | KRT18, CK18 | ||
Description: | None |
Percent Identity: | 83.26 % |
Parental protein coverage: | 97.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PPALPPSSMSFTARSTFSSNYRSLG--SVQAPSHRVRPISSSAASVYAGAGGSGSRISVSRSTSFRGGWG |
PP..P..S.S.....T.S......G......PSH.VRPISS.A.SVYAG.GGSGS..S.S.STSF.GGW. | |
Retrocopy | PPESPFGSPSSMSSTTRSPSLPTTGPRAPCSPSHQVRPISSTA-SVYAGMGGSGSQTSISCSTSFPGGWR |
Parental | SGGLAAGMAGGLAGIGGIQGEKETMQDLNDRLASYLEKVRSLEADNQRLEMKIREHLEKKG-PQVRDWGH |
SGG.AAGMAGGLAGIGGIQG.KETMQDL.DRLASYLE.VR.LEADNQRLEMKIREHLEKKG..QVRD.GH | |
Retrocopy | SGGPAAGMAGGLAGIGGIQGKKETMQDLSDRLASYLERVRRLEADNQRLEMKIREHLEKKG>SQVRDGGH |
Parental | YFKTIEDLRAQIFASAVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDTNVTRLQ |
.FKT..DLRAQIFASAVDNARIVLQI.NARLAADDF.VKYE.ELAMRQSVESDIHGLRKVIDDTNVTRL. | |
Retrocopy | DFKTTKDLRAQIFASAVDNARIVLQIGNARLAADDF*VKYEMELAMRQSVESDIHGLRKVIDDTNVTRLH |
Parental | LETEIEALKEELLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQY-DELAQKNREEL |
LETEIEALKEELLFMKKNHE..VKGLQNQIANSGLTVELDAPKSQ.LSKIMA.IRAQ..D.LAQKN..EL | |
Retrocopy | LETEIEALKEELLFMKKNHEQ-VKGLQNQIANSGLTVELDAPKSQGLSKIMAGIRAQM<DKLAQKNWKEL |
Parental | DKYWSQQIEESTTVVTTQTAEIGEAEMTLTELRRTAQSLEINLDSMRNLKASLENSLREVETRYAMQMEQ |
DKYWSQQI.ESTTVVTTQT.EIGEAEMTL.ELR.T.QSL.INLDSMRNLK.SLENSLREV...Y.MQMEQ | |
Retrocopy | DKYWSQQIKESTTVVTTQTSEIGEAEMTLMELRCTTQSLKINLDSMRNLKSSLENSLREVKACYVMQMEQ |
Parental | LNGVLLHLESELSQTRAEGQRQAQEYEALLNVKVKLEAEIATYRRLLEDGEDFSLTDALDSSNSLHTIQK |
LNG.LLHLESELSQTRAEGQ.QAQEYEALLNVKVKLEAEIAT..RLLEDGEDFSLTDALD.SNSL.TIQK | |
Retrocopy | LNGILLHLESELSQTRAEGQLQAQEYEALLNVKVKLEAEIATDCRLLEDGEDFSLTDALDNSNSLQTIQK |
Parental | TTTRKIVDGKVVSETNDTKILR |
TTTRKIVDGKVVSETNDTKILR | |
Retrocopy | TTTRKIVDGKVVSETNDTKILR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .46 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .18 RPM |
SRP017611_liver | 0 .00 RPM | 367 .28 RPM |