Parental gene:

RPS16, ENSCAFG00000005501

Aliases:None
Description:ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]
Organism:Dog (Canis familiaris)
Coordinates:1:113795310..113798315(+)


>ENSCAFG00000005501
GCAGCGCCGCGCGGTGAAGAGCTCTTCCCTACCGTCGCAGCCATGCCGTCCAAGGGTCCTCTGCAGTCCGTGCAGGTCTT
CGGACGTAAGAAGACGGCCACCGCCGTGGCGCACTGCAAGCGGGGCAACGGCCTCATCAAGGTGAACGGGCGGCCCCTGG
AGATGATCGAGCCACGCACGCTGCAGTACAAGCTACTGGAACCTGTTCTGCTTCTGGGCAAGGAGCGATTTGCCGGGGTG
GACATCCGTGTCCGAGTGAAGGGTGGTGGTCACGTGGCCCAGATTTACGCCATCCGCCAGTCCATCTCCAAGGCGCTGGT
GGCCTATTACCAGAAATATGTGGACGAGGCCTCCAAGAAGGAGATCAAAGACATCCTTATCCAGTACGACCGGACCCTGC
TGGTGGCAGATCCCCGGCGCTGTGAATCCAAAAAGTTTGGCGGTCCTGGTGCCCGTGCTCGCTACCAGAAATCCTACCGA
TGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 242 .46 RPM
SRP017611_brain 63 .91 RPM
SRP017611_kidney 512 .38 RPM
SRP017611_liver 149 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014176 ortholog_one2one 1 retrogene
retro_acar_194,
Bos taurus ENSBTAG00000021093 possible_ortholog 3 retrogenes
retro_btau_1509, retro_btau_167, retro_btau_441,
Callithrix jacchus ENSCJAG00000014170 possible_ortholog 6 retrogenes
retro_cjac_2641, retro_cjac_2737, retro_cjac_3019, retro_cjac_885, retro_cjac_905, retro_cjac_949,
Cavia porcellus ENSCPOG00000011359 possible_ortholog 3 retrogenes
retro_cpor_1266, retro_cpor_1408, retro_cpor_1515,
Equus caballus ENSECAG00000004311 ortholog_one2one 2 retrogenes
retro_ecab_186, retro_ecab_779,
Felis catus ENSFCAG00000010743 ortholog_one2one 4 retrogenes
retro_fcat_1258, retro_fcat_1709, retro_fcat_1806, retro_fcat_1976,
Gorilla gorilla ENSGGOG00000014414 possible_ortholog 10 retrogenes
retro_ggor_110, retro_ggor_1250, retro_ggor_1344, retro_ggor_1664, retro_ggor_1766, retro_ggor_193, retro_ggor_2423, retro_ggor_2819, retro_ggor_652, retro_ggor_667,
Loxodonta africana ENSLAFG00000001541 ortholog_one2one 1 retrogene
retro_lafr_1191,
Macaca mulatta ENSMMUG00000019370 possible_ortholog 8 retrogenes
retro_mmul_1018, retro_mmul_1080, retro_mmul_1175, retro_mmul_1219, retro_mmul_1403, retro_mmul_20, retro_mmul_767, retro_mmul_862,
Monodelphis domestica ENSMODG00000013545 ortholog_one2one 4 retrogenes
retro_mdom_1668, retro_mdom_1823, retro_mdom_815, retro_mdom_856,
Nomascus leucogenys ENSNLEG00000014388 possible_ortholog 3 retrogenes
retro_nleu_1266, retro_nleu_248, retro_nleu_46,
Oryctolagus cuniculus ENSOCUG00000002150 ortholog_one2one 14 retrogenes
retro_ocun_1028, retro_ocun_1073, retro_ocun_1394, retro_ocun_1430, retro_ocun_1436, retro_ocun_1774, retro_ocun_371, retro_ocun_580, retro_ocun_632, retro_ocun_645, retro_ocun_670, retro_ocun_837, retro_ocun_906, retro_ocun_986,
Otolemur garnettii ENSOGAG00000004497 ortholog_one2one 4 retrogenes
retro_ogar_1229, retro_ogar_1309, retro_ogar_1313, retro_ogar_98,
Oreochromis niloticus ENSONIG00000000006 ortholog_one2one 1 retrogene
retro_onil_52,
Pelodiscus sinensis ENSPSIG00000016930 ortholog_one2one 1 retrogene
retro_psin_55,
Rattus norvegicus ENSRNOG00000019578 possible_ortholog 3 retrogenes
retro_rnor_10, retro_rnor_1823, retro_rnor_302,
Sus scrofa ENSSSCG00000010712 possible_ortholog 1 retrogene
retro_sscr_731,
Sus scrofa ENSSSCG00000020817 possible_ortholog 3 retrogenes
retro_sscr_478, retro_sscr_5, retro_sscr_723,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_799 58.26 69.38
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2. retro_cfam_908 67.11 93.12
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3. retro_cfam_1349 62.86 65.00
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4. retro_cfam_1754 64.89 58.12
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5. retro_cfam_2142 64.95 59.38
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6. retro_cfam_2147 69.11 76.25
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Download FASTA sequences of all ENSCAFG00000005501 retrocopies