Parental gene:

PDAP1, ENSCJAG00000015838

Aliases:None
Description:PDGFA associated protein 1 [Source:HGNC Symbol;Acc:14634]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:12517919..12574017(+)


>ENSCJAG00000015838
ATGCCTAAAGGAGGGAGAAAGGGAGGCCATAAAGGCCGGGCAAGGCAGTATACGAGCCCTGAGGAGATCGACGCACAGCT
CCAGGCTGAGAAGCAGAAGGCCAGGGAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGG
AGAAGAAATCTCTAGACTCAGACGACAGTGAGGATGAAGAAGATGACTACCAGCAAAAGCGCAAAGGGGTTGAAGGGCTC
ATTGACATCGAGAACCCCAACCGGGTGGCACAGACGACCAAAAAGGTCACACAACTGGATCTGGACGGGCCAAAGGAGCT
TTCAAGGAGAGAACGAGAAGAGATTGAGAAGCAGAAGGCAAAAGAGCGTTACATGAAAATGCACTTGGCCGGGAAGACAG
AGCAAGCCAAGGCAGACCTGGCCCGGCTGGCCATCATCCGGAAACAGCGGGAGGAAGCTGCCAGGAAGAAGGAGGAGGAA
AGGAAAGCAAAAGATGATGCCACACTGTCGGGAAAAAGAATGCAGTCACTCTCCCTGAATAAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 16 .51 RPM
SRP051959_skeletal_muscle 36 .43 RPM
SRP051959_lymph_node 16 .00 RPM
SRP051959_lung 20 .58 RPM
SRP051959_liver 17 .05 RPM
SRP051959_kidney 25 .03 RPM
SRP051959_heart 21 .82 RPM
SRP051959_colon 17 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000024426 ortholog_one2one 1 retrogene
retro_ecab_449,
Echinops telfairi ENSETEG00000009926 ortholog_one2one 1 retrogene
retro_etel_900,
Felis catus ENSFCAG00000015067 ortholog_one2one 1 retrogene
retro_fcat_1227,
Homo sapiens ENSG00000106244 ortholog_one2one 3 retrogenes
retro_hsap_1061, retro_hsap_3210, retro_hsap_3506,
Gorilla gorilla ENSGGOG00000025196 ortholog_one2one 5 retrogenes
retro_ggor_1776, retro_ggor_1778, retro_ggor_2179, retro_ggor_2371, retro_ggor_837,
Macaca mulatta ENSMMUG00000001460 ortholog_one2one 2 retrogenes
retro_mmul_1865, retro_mmul_943,
Mus musculus ENSMUSG00000029623 ortholog_one2one 1 retrogene
retro_mmus_2581,
Nomascus leucogenys ENSNLEG00000011017 ortholog_one2one 1 retrogene
retro_nleu_1158,
Otolemur garnettii ENSOGAG00000010874 ortholog_one2many 2 retrogenes
retro_ogar_2199, retro_ogar_789,
Ochotona princeps ENSOPRG00000013615 ortholog_one2one 2 retrogenes
retro_opri_262, retro_opri_512,
Pongo abelii ENSPPYG00000017375 ortholog_one2one 4 retrogenes
retro_pabe_2659, retro_pabe_2806, retro_pabe_2901, retro_pabe_884,
Pan troglodytes ENSPTRG00000041711 ortholog_one2one 4 retrogenes
retro_ptro_1711, retro_ptro_2240, retro_ptro_2378, retro_ptro_722,
Ictidomys tridecemlineatus ENSSTOG00000001679 ortholog_one2one 1 retrogene
retro_itri_765,
Tupaia belangeri ENSTBEG00000010152 ortholog_one2one 5 retrogenes
retro_tbel_1365, retro_tbel_3543, retro_tbel_4066, retro_tbel_766, retro_tbel_975,
Tursiops truncatus ENSTTRG00000003004 ortholog_one2one 1 retrogene
retro_ttru_1343,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2676 75.74 74.03
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2. retro_cjac_2725 50.89 60.77
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Download FASTA sequences of all ENSCJAG00000015838 retrocopies