Parental gene: | PDAP1, ENSPTRG00000041711 |
| Aliases: | None |
| Description: | PDGFA associated protein 1 [Source:HGNC Symbol;Acc:14634] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:99940058..99954058(-) |
>ENSPTRG00000041711
ATGCCTAAAGGAGGAAGAAAGGGAGGCCACAAAGGCCGGGCGAGGCAGTATACAAGCCCTGAGGAGATCGACGCGCAGCT
GCAGGCTGAGAAGCAGAAGGCCAGGGAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGG
AGAAGAAATCTCTAGACTCAGATGAGAGTGAGGATGAAGAAGATGACTACCAGCAAAAGCGCAAAGGCGTTGAAGGGCTC
ATCGACATCGAGAACCCCAACCGGGTGGCACAGACAACCAAAAAGGTCACACAACTGGATCTGGACGGGCCAAAGGAGCT
TTCGAGGAGAGAACGAGAAGAGATTGAGAAGCAGAAGGCAAAAGAGCGTTACATGAAAATGCACTTGGCCGGGAAGACAG
AGCAAGCCAAGGCTGACCTGGCCCGGCTGGCCATCATCCGGAAACAGCGGGAGGAGGCTGCCCGGAAGAAGGAAGAGGAA
AGGAAAGCAAAAGACGATGCCACATTGTCAGGAAAACGAATGCAGTCACTCTCCCTGAATAAGTAA
ATGCCTAAAGGAGGAAGAAAGGGAGGCCACAAAGGCCGGGCGAGGCAGTATACAAGCCCTGAGGAGATCGACGCGCAGCT
GCAGGCTGAGAAGCAGAAGGCCAGGGAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGG
AGAAGAAATCTCTAGACTCAGATGAGAGTGAGGATGAAGAAGATGACTACCAGCAAAAGCGCAAAGGCGTTGAAGGGCTC
ATCGACATCGAGAACCCCAACCGGGTGGCACAGACAACCAAAAAGGTCACACAACTGGATCTGGACGGGCCAAAGGAGCT
TTCGAGGAGAGAACGAGAAGAGATTGAGAAGCAGAAGGCAAAAGAGCGTTACATGAAAATGCACTTGGCCGGGAAGACAG
AGCAAGCCAAGGCTGACCTGGCCCGGCTGGCCATCATCCGGAAACAGCGGGAGGAGGCTGCCCGGAAGAAGGAAGAGGAA
AGGAAAGCAAAAGACGATGCCACATTGTCAGGAAAACGAATGCAGTCACTCTCCCTGAATAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 86 .71 RPM |
| SRP007412_cerebellum | 84 .14 RPM |
| SRP007412_heart | 51 .82 RPM |
| SRP007412_kidney | 61 .64 RPM |
| SRP007412_liver | 67 .11 RPM |
| SRP007412_testis | 54 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015838 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000024426 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000009926 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000015067 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106244 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025196 | ortholog_one2one | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000001460 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000029623 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011017 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010874 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000013615 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017375 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001679 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010152 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003004 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_722 | 94.51 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1711 | 60.71 | 61.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2240 | 90.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2378 | 88.40 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000041711 retrocopies