Parental gene: | PDAP1, ENSPPYG00000017375 |
| Aliases: | None |
| Description: | PDGFA associated protein 1 [Source:HGNC Symbol;Acc:14634] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:8301512..8308838(-) |
>ENSPPYG00000017375
GAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGGAGAAGAAATCTCTAGACTCAGATGA
GAGTGAGGATGAAGAAGATGACTACCAGCAAAAGCGCAAAGGCGTTGAAGGGCTCATCGACATCGAGAACCCCAACCGGG
TGGCACAGACAACCAAAAAGGTCACACAACTGGATCTGGACGGGCCAAAGGAGCTTTCGAGGAGAGAACGAGAAGAGATT
GAGAAGCAGAAGGCAAAAGAGCGTTACATGAAAATGCACTTGGCCGGGAAGACAGAGCAAGCCAAGGCTGACCTGGCCCG
GCTGGCCATCATCCGGAAACAGCGGGAGGAGGCTGCCCGGAAGAAGGAAGAGGAAAGGAAAGCAAAAGACGATGCCACAT
TGTCAGGAAAACGAATGCAATCGCTCTCCCTGAATAAGTAA
GAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGGAGAAGAAATCTCTAGACTCAGATGA
GAGTGAGGATGAAGAAGATGACTACCAGCAAAAGCGCAAAGGCGTTGAAGGGCTCATCGACATCGAGAACCCCAACCGGG
TGGCACAGACAACCAAAAAGGTCACACAACTGGATCTGGACGGGCCAAAGGAGCTTTCGAGGAGAGAACGAGAAGAGATT
GAGAAGCAGAAGGCAAAAGAGCGTTACATGAAAATGCACTTGGCCGGGAAGACAGAGCAAGCCAAGGCTGACCTGGCCCG
GCTGGCCATCATCCGGAAACAGCGGGAGGAGGCTGCCCGGAAGAAGGAAGAGGAAAGGAAAGCAAAAGACGATGCCACAT
TGTCAGGAAAACGAATGCAATCGCTCTCCCTGAATAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 74 .97 RPM |
| SRP007412_cerebellum | 38 .91 RPM |
| SRP007412_heart | 31 .43 RPM |
| SRP007412_kidney | 72 .53 RPM |
| SRP007412_liver | 39 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015838 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000024426 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000009926 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000015067 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000106244 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000025196 | ortholog_one2one | 5 retrogenes | |
| Macaca mulatta | ENSMMUG00000001460 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000029623 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011017 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010874 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000013615 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000041711 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001679 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010152 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003004 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_884 | 93.20 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2659 | 92.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2806 | 93.20 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2901 | 86.99 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000017375 retrocopies