Parental gene:

RPL17-C18orf32, ENSTTRG00000005797

Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_110833:4785..6881(+)


>ENSTTRG00000005797
ATGCAAGTCGAGAGGCAAATCTTCGTGTTCACTTTAAGGAACACTCGTGAAACAGCCCAGGCCATTAAGGGTATGCATAT
CCGAAAAGCCACTAAGTATCTGAAGGATGTCACTTTAAAGAAGCAGTGTGTGCCATTCCGTCGCTACAATGGTGGAGTTG
GTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGGGTCGGTGGCCCAAAAAGAGTGCTGAATTTTTACTGCACATG
CTCAAAAATGCAGAGAGTAATGCTGAACTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATGCGGCGCAGGACTTACAGAGCTCATGGTCGGATCAACATACATGAGCTCTCCGTGCCACATTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 ortholog_one2one 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Echinops telfairi ENSETEG00000011322 ortholog_one2one 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000016709 ortholog_one2one 26 retrogenes
Microcebus murinus ENSMICG00000017102 ortholog_one2one 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 ortholog_one2one 8 retrogenes
Pongo abelii ENSPPYG00000009151 ortholog_one2one 43 retrogenes
Pteropus vampyrus ENSPVAG00000001969 ortholog_one2one 76 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Tarsius syrichta ENSTSYG00000007402 ortholog_one2one 20 retrogenes
Vicugna pacos ENSVPAG00000009568 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_49 70.65 69.47
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2. retro_ttru_178 75.19 97.71
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3. retro_ttru_193 64.39 100.00
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4. retro_ttru_232 77.52 97.71
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5. retro_ttru_264 70.59 77.86
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6. retro_ttru_299 66.92 98.47
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7. retro_ttru_447 71.65 96.18
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8. retro_ttru_568 61.26 84.73
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9. retro_ttru_609 71.54 97.71
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10. retro_ttru_627 67.69 97.71
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11. retro_ttru_636 70.54 97.71
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12. retro_ttru_660 64.34 97.71
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13. retro_ttru_691 73.08 97.71
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14. retro_ttru_703 62.81 91.60
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15. retro_ttru_747 62.22 68.70
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16. retro_ttru_800 75.97 97.71
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17. retro_ttru_836 74.42 97.71
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18. retro_ttru_884 70.54 97.71
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19. retro_ttru_992 71.32 97.71
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20. retro_ttru_1153 64.35 85.50
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21. retro_ttru_1338 70.49 91.60
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22. retro_ttru_1374 67.69 97.71
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23. retro_ttru_1436 54.62 97.71
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24. retro_ttru_1509 70.54 97.71
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25. retro_ttru_1716 66.67 67.94
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26. retro_ttru_1757 74.42 97.71
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27. retro_ttru_1784 82.80 69.47
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28. retro_ttru_1811 73.28 97.71
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29. retro_ttru_1854 75.97 97.71
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30. retro_ttru_1856 73.85 97.71
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31. retro_ttru_1932 74.42 97.71
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Download FASTA sequences of all ENSTTRG00000005797 retrocopies