Parental gene:

RPL17-C18orf32, ENSPVAG00000001969

Aliases:None
Description:RPL17-C18orf32 readthrough [Source:HGNC Symbol;Acc:44661]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1559:612415..614158(-)


>ENSPVAG00000001969
ATGCAAATCAAGAGGCAAATCTTCGTGTTCACTTTAAGGAATACTCGTGAAACTGCCCAGGCCATCAAGGGTATGCATAT
TCGAAAAGCCACCAAGTATCTGAAGGATGTCACTTTACAGAAGCAATGTGTACCATTCCGTCGTTACAATGGTGGAGTTG
GTAGGTGTGCCCAGGCCAAACAGTGGGGCTGGACACAGGGTCGATGGCCTAAAAAGAGTGCTGAATTCTTGCTGCACATG
CTTAAAAATGCAGAGAGTAATGCTGAACTTAAGGGTTTAGATGTAGATTCTCTGGTCATTGAGCATATCCAGGTGAACAA
AGCTCCCAAGATGCGGCGCAGAACTTACAGAGCTCATGGGCGGATTAACCTATATGAGCTCTCCTTGCCACATTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009498 possible_ortholog 40 retrogenes
Bos taurus ENSBTAG00000022902 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000019044 possible_ortholog 7 retrogenes
Choloepus hoffmanni ENSCHOG00000007872 ortholog_one2one 50 retrogenes
Callithrix jacchus ENSCJAG00000004779 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000019337 possible_ortholog 31 retrogenes
Echinops telfairi ENSETEG00000011322 ortholog_one2one 10 retrogenes
Felis catus ENSFCAG00000011342 possible_ortholog 43 retrogenes
Homo sapiens ENSG00000265681 possible_ortholog 33 retrogenes
Gorilla gorilla ENSGGOG00000026697 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000016709 ortholog_one2one 26 retrogenes
Microcebus murinus ENSMICG00000017102 ortholog_one2one 14 retrogenes
Myotis lucifugus ENSMLUG00000025554 possible_ortholog 22 retrogenes
Myotis lucifugus ENSMLUG00000029264 possible_ortholog 36 retrogenes
Monodelphis domestica ENSMODG00000003534 possible_ortholog 11 retrogenes
Mustela putorius furo ENSMPUG00000000801 possible_ortholog 7 retrogenes
Mus musculus ENSMUSG00000062328 possible_ortholog 80 retrogenes
Oryctolagus cuniculus ENSOCUG00000012485 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000003103 ortholog_one2one 8 retrogenes
Pongo abelii ENSPPYG00000009151 ortholog_one2one 43 retrogenes
Rattus norvegicus ENSRNOG00000018680 possible_ortholog 48 retrogenes
Tarsius syrichta ENSTSYG00000007402 ortholog_one2one 20 retrogenes
Tursiops truncatus ENSTTRG00000005797 ortholog_one2one 31 retrogenes
Vicugna pacos ENSVPAG00000009568 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_40 76.67 90.08
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2. retro_pvam_55 81.67 90.08
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3. retro_pvam_88 82.29 73.28
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4. retro_pvam_104 64.12 96.18
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5. retro_pvam_138 71.88 94.66
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6. retro_pvam_142 82.91 88.55
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7. retro_pvam_143 72.73 83.21
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8. retro_pvam_182 70.08 94.66
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9. retro_pvam_206 73.44 96.18
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10. retro_pvam_220 73.60 93.89
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11. retro_pvam_263 66.93 96.18
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12. retro_pvam_268 80.62 96.18
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13. retro_pvam_278 71.88 96.18
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14. retro_pvam_292 61.68 80.92
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15. retro_pvam_309 71.93 85.50
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16. retro_pvam_339 74.40 95.42
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17. retro_pvam_348 68.38 87.02
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18. retro_pvam_395 71.54 95.42
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19. retro_pvam_402 77.36 77.86
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20. retro_pvam_417 71.54 91.60
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21. retro_pvam_424 65.52 65.65
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22. retro_pvam_439 70.42 52.67
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23. retro_pvam_442 67.19 96.18
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24. retro_pvam_455 68.75 96.18
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25. retro_pvam_464 73.64 96.18
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26. retro_pvam_497 82.05 87.02
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27. retro_pvam_520 76.86 91.60
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28. retro_pvam_571 84.75 89.31
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29. retro_pvam_577 81.25 83.97
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30. retro_pvam_584 80.58 78.63
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31. retro_pvam_588 72.48 83.21
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32. retro_pvam_596 65.06 61.83
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33. retro_pvam_604 64.52 93.89
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34. retro_pvam_608 75.97 96.18
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35. retro_pvam_654 73.91 86.26
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36. retro_pvam_659 84.25 96.18
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37. retro_pvam_684 81.65 80.92
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38. retro_pvam_700 59.46 81.68
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39. retro_pvam_701 75.31 61.83
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40. retro_pvam_705 82.05 87.79
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41. retro_pvam_712 70.00 96.18
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42. retro_pvam_716 59.17 90.08
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43. retro_pvam_726 87.60 91.60
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44. retro_pvam_751 66.39 91.60
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45. retro_pvam_756 66.27 61.83
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46. retro_pvam_777 66.67 95.42
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47. retro_pvam_862 74.02 95.42
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48. retro_pvam_925 73.64 96.18
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49. retro_pvam_966 71.07 90.84
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50. retro_pvam_1003 78.91 96.18
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51. retro_pvam_1005 67.33 77.10
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52. retro_pvam_1020 70.91 83.21
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53. retro_pvam_1036 77.78 88.55
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54. retro_pvam_1037 71.55 88.55
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55. retro_pvam_1042 71.17 83.97
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56. retro_pvam_1085 60.00 74.05
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57. retro_pvam_1093 76.42 91.60
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58. retro_pvam_1105 78.91 96.18
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59. retro_pvam_1155 81.25 96.18
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60. retro_pvam_1162 70.69 87.79
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61. retro_pvam_1186 83.87 93.89
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62. retro_pvam_1194 71.88 94.66
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63. retro_pvam_1204 64.57 93.89
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64. retro_pvam_1218 80.47 96.18
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65. retro_pvam_1279 67.97 96.18
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66. retro_pvam_1336 72.09 96.18
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67. retro_pvam_1338 64.81 79.39
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68. retro_pvam_1351 64.66 85.50
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69. retro_pvam_1366 78.41 67.18
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70. retro_pvam_1372 71.09 95.42
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71. retro_pvam_1392 64.89 70.99
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72. retro_pvam_1397 72.66 96.18
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73. retro_pvam_1407 76.09 69.47
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74. retro_pvam_1409 83.87 93.89
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75. retro_pvam_1452 73.64 96.18
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76. retro_pvam_1454 74.60 96.18
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Download FASTA sequences of all ENSPVAG00000001969 retrocopies