Parental gene:

RPL32, ENSCPOG00000019967

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_109:2758954..2762079(-)


>ENSCPOG00000019967
ATGGCGGCCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAGAGGACAAAGAAGTTCATCCGTCACCAGTCAGACCG
ATATGTCAAAATTAAGCGCAACTGGCGGAAACCTAGAGGCATCGACAACAGGGTGCGGAGAAGGTTCAAGGGCCAGATCT
TGATGCCCAACATAGGTTATGGAAGCAACAAAAAGACGAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTGCAC
AATGTTAAGGAGCTGGAGGTGCTGCTGATGTGCAACAAATCTTACTGTGCAGAGATTGCTCACAATGTCTCCTCCAAGAA
CCGCAAGGCCATTGTGGAACGAGCAGCCCAGCTAGCCATCCGAGTCACCAACCCCAATGCCAGGCTGCGCAGCGAAGAAA
ACGAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 100 .77 RPM
SRP017611_kidney 128 .66 RPM
SRP017611_liver 97 .28 RPM
SRP040447_lung 174 .93 RPM
SRP040447_skeletal_muscle 170 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2many 3 retrogenes
retro_acar_104, retro_acar_125, retro_acar_67,
Ailuropoda melanoleuca ENSAMEG00000004583 possible_ortholog 26 retrogenes
retro_amel_1004, retro_amel_1041, retro_amel_1059, retro_amel_112, retro_amel_1274, retro_amel_1284, retro_amel_13, retro_amel_1394, retro_amel_1450, retro_amel_150, retro_amel_1651, retro_amel_168, retro_amel_1766, retro_amel_1827, retro_amel_1897, retro_amel_274, retro_amel_275, retro_amel_44, retro_amel_573, retro_amel_658, retro_amel_71, retro_amel_776, retro_amel_781, retro_amel_871, retro_amel_892, retro_amel_923,
Bos taurus ENSBTAG00000015283 possible_ortholog 10 retrogenes
retro_btau_1102, retro_btau_1391, retro_btau_1568, retro_btau_1645, retro_btau_1728, retro_btau_1764, retro_btau_377, retro_btau_623, retro_btau_631, retro_btau_654,
Choloepus hoffmanni ENSCHOG00000013534 possible_ortholog 27 retrogenes
retro_chof_1131, retro_chof_1164, retro_chof_1181, retro_chof_1234, retro_chof_1461, retro_chof_152, retro_chof_1821, retro_chof_1957, retro_chof_2022, retro_chof_205, retro_chof_2090, retro_chof_2146, retro_chof_2242, retro_chof_2265, retro_chof_2301, retro_chof_2410, retro_chof_2509, retro_chof_2527, retro_chof_2606, retro_chof_276, retro_chof_286, retro_chof_313, retro_chof_554, retro_chof_585, retro_chof_607, retro_chof_758, retro_chof_913,
Equus caballus ENSECAG00000007201 possible_ortholog 4 retrogenes
retro_ecab_1115, retro_ecab_26, retro_ecab_369, retro_ecab_698,
Erinaceus europaeus ENSEEUG00000011609 ortholog_one2one 5 retrogenes
retro_eeur_161, retro_eeur_247, retro_eeur_300, retro_eeur_39, retro_eeur_576,
Homo sapiens ENSG00000144713 ortholog_one2one 20 retrogenes
retro_hsap_1013, retro_hsap_1115, retro_hsap_1547, retro_hsap_1789, retro_hsap_1956, retro_hsap_2618, retro_hsap_2821, retro_hsap_2891, retro_hsap_3024, retro_hsap_3450, retro_hsap_3536, retro_hsap_3582, retro_hsap_3726, retro_hsap_3805, retro_hsap_3936, retro_hsap_3982, retro_hsap_4008, retro_hsap_4155, retro_hsap_4677, retro_hsap_814,
Loxodonta africana ENSLAFG00000032737 ortholog_one2one 1 retrogene
retro_lafr_14,
Myotis lucifugus ENSMLUG00000022528 ortholog_one2one 6 retrogenes
retro_mluc_100, retro_mluc_1283, retro_mluc_173, retro_mluc_2224, retro_mluc_2256, retro_mluc_48,
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2many 1 retrogene
retro_shar_580,
Ictidomys tridecemlineatus ENSSTOG00000026505 ortholog_one2one 9 retrogenes
retro_itri_1294, retro_itri_1322, retro_itri_1465, retro_itri_1639, retro_itri_1715, retro_itri_1748, retro_itri_370, retro_itri_885, retro_itri_948,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_608 72.26 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_1241 66.36 78.52
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000019967 retrocopies