Parental gene:

ENSECAG00000007201

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:16:4490972..4496417(+)


>ENSECAG00000007201
ATGGCTGCCCTCAGACCCCTCGTGAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTCATTCGGCACCAGTCAGACCG
ATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGCATTGACAATAGGGTGCGCAGAAGATTCAAGGGCCAGATAT
TGATGCCCAACATTGGTTATGGGAGCAATAAGAAAACGAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTCCAC
AATGTCAAGGAGCTTGAAGTGCTGCTCATGTGCAACAAATCGTACTGTGCTGAGATTGCTCACAATGTCTCCTCCAAGAA
CCGCAAAGCCATCGTGGAAAGAGCAGCCCAGCTGGCCATCAGAATCACCAATCCCAATGCCAGGCTGCGCAGCGAAGAAA
ACGAATAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 133 .35 RPM
SRP021940_cerebellum 45 .44 RPM
SRP021940_embryo 97 .07 RPM
SRP021940_placental_villous 63 .27 RPM
SRP021940_synovial_membrane 93 .34 RPM
SRP021940_testis 44 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2many 3 retrogenes
Ailuropoda melanoleuca ENSAMEG00000004583 ortholog_one2one 26 retrogenes
Bos taurus ENSBTAG00000015283 ortholog_one2one 10 retrogenes
Choloepus hoffmanni ENSCHOG00000013534 ortholog_one2one 27 retrogenes
Cavia porcellus ENSCPOG00000019967 possible_ortholog 2 retrogenes
Dipodomys ordii ENSDORG00000008426 possible_ortholog 6 retrogenes
Erinaceus europaeus ENSEEUG00000011609 possible_ortholog 5 retrogenes
Felis catus ENSFCAG00000030450 possible_ortholog 38 retrogenes
Homo sapiens ENSG00000144713 possible_ortholog 20 retrogenes
Loxodonta africana ENSLAFG00000032737 possible_ortholog 1 retrogene
Myotis lucifugus ENSMLUG00000022528 possible_ortholog 6 retrogenes
Macaca mulatta ENSMMUG00000001340 possible_ortholog 6 retrogenes
Mustela putorius furo ENSMPUG00000017189 possible_ortholog 4 retrogenes
Mus musculus ENSMUSG00000057841 possible_ortholog 16 retrogenes
Nomascus leucogenys ENSNLEG00000004789 possible_ortholog 12 retrogenes
Otolemur garnettii ENSOGAG00000028498 possible_ortholog 24 retrogenes
Pongo abelii ENSPPYG00000013391 possible_ortholog 2 retrogenes
Rattus norvegicus ENSRNOG00000010746 possible_ortholog 4 retrogenes
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2many 1 retrogene
Sus scrofa ENSSSCG00000027637 possible_ortholog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000026505 possible_ortholog 9 retrogenes
Tupaia belangeri ENSTBEG00000012875 possible_ortholog 3 retrogenes
Vicugna pacos ENSVPAG00000002594 possible_ortholog 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_26 94.81 100.00
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2. retro_ecab_369 60.75 77.04
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3. retro_ecab_698 91.11 100.00
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4. retro_ecab_1115 97.06 100.00
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Download FASTA sequences of all ENSECAG00000007201 retrocopies