RetrogeneDB ID: | retro_itri_1748 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393713.1:5603..5998(-) | ||
Located in intron of: | ENSSTOG00000005315 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSSTOG00000026505 | ||
Aliases: | None | ||
Description: | ribosomal protein L32 [Source:HGNC Symbol;Acc:10336] |
Percent Identity: | 58.21 % |
Parental protein coverage: | 98.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLP- |
.LRPL.K....KK..KK.....SD.Y...K.N..KPR...N.V.RR..G..L.PNIGYGSNK..K.MLP. | |
Retrocopy | SLRPLRKYEVIKKKNKKLFQL*SD-YICQKYNQ*KPRDSHNWVQRRLEGHSLIPNIGYGSNKEVKPMLP< |
Parental | SGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
SGF.KFLV.NVK.LE.LL..N.SYCAEIAH..SS.N..AIV.....LA.RVT..NARL.SE.NE | |
Retrocopy | SGFWKFLVPNVKDLEMLLLSNESYCAEIAHSISSMNLRAIVKKDTLLALRVTSSNARLHSEGNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |