RetrogeneDB ID: | retro_ecab_1115 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:60753332..60753736(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000011121 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000007201 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.06 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MAALRPLVKPKIVKKRTKKFIRHQSD.YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML | |
Retrocopy | MAALRPLVKPKIVKKRTKKFIRHQSD*YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNA-RLRSEENE |
PSGFRKFLVHNVKELEVLLMCNKSYCAEIAH.VSSKNRKAIVERAAQLAIRITNPNA..LRSEENE | |
Retrocopy | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHDVSSKNRKAIVERAAQLAIRITNPNA<QLRSEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .71 RPM | 133 .35 RPM |
SRP021940_cerebellum | 0 .42 RPM | 45 .44 RPM |
SRP021940_embryo | 1 .05 RPM | 97 .07 RPM |
SRP021940_placental_villous | 0 .48 RPM | 63 .27 RPM |
SRP021940_synovial_membrane | 0 .82 RPM | 93 .34 RPM |
SRP021940_testis | 0 .38 RPM | 44 .95 RPM |