RetrogeneDB ID: | retro_btau_1391 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:80789547..80789860(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSBTAG00000015283 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L32 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZQ6] |
Percent Identity: | 62.86 % |
Parental protein coverage: | 76.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAALRPLVKPKI-VKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHM |
MAALRPL.KPKI.VKKRTK.FI.HQSDRYVKIK.N..KPRG.DNRV.RRFKGQ........G.....K.. | |
Retrocopy | MAALRPLLKPKISVKKRTKEFIQHQSDRYVKIKQNQQKPRGTDNRVSRRFKGQRSRCPTWLGEQQENKVL |
Parental | L-PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNV |
...SGF.KFLVHN.KELEVLLMCN...C....... | |
Retrocopy | V>ASGF*KFLVHNLKELEVLLMCNIFQCRDCSQHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 69 .50 RPM |
ERP005899_muscle | 0 .00 RPM | 1096 .54 RPM |
SRP017611_brain | 0 .00 RPM | 108 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 229 .50 RPM |
SRP017611_liver | 0 .00 RPM | 143 .69 RPM |
SRP030211_testis | 0 .02 RPM | 205 .08 RPM |