RetrogeneDB ID: | retro_ecab_369 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:82791202..82791513(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000007201 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.75 % |
Parental protein coverage: | 77.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ALRPLVKPKIVKKR-TKKFIRHQSDRYVKIKRNWRKPRG-IDNRVRRRFKGQILMPNIGYGSNKKTKHML |
ALR.LVKP.I..K..TKKFI.HQ.DRYV.IK.NWR.P.G..D..V..RFK..I.MPN.G...NKKTK..L | |
Retrocopy | ALRTLVKPTIINKG<TKKFIQHQADRYVNIKCNWRGPGG<LDHKVQSRFKARIVMPNAGHQNNKKTKDRL |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAH-NVSSK |
PS.F.KFL.H...ELE.L..CN..YC.EI...NVSSK | |
Retrocopy | PSVFQKFLIHKIMELEMLPTCNRPYCTEITQ>NVSSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 133 .35 RPM |
SRP021940_cerebellum | 0 .00 RPM | 45 .44 RPM |
SRP021940_embryo | 0 .03 RPM | 97 .07 RPM |
SRP021940_placental_villous | 0 .00 RPM | 63 .27 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 93 .34 RPM |
SRP021940_testis | 0 .06 RPM | 44 .95 RPM |