Parental gene:

TUBA1C, ENSECAG00000009504

Aliases:None
Description:tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768]
Organism:Horse (Equus caballus)
Coordinates:6:67026182..67033054(+)


>ENSECAG00000009504
ATGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATCGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACCGGCGCTGGCAAGCACGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGTGGGCA
CTACACCATTGGCAAGGAGATCATCGACCTCGTCTTGGACCGAATTCGGAAGCTGGCCGACCAGTGCACAGGTCTTCAGG
GCTTCCTGGTTTTCCACAGCTTTGGAGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATTTACCCAGCCCCCCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTC
GTAGAAACCTCGATATTGAGCGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCCTCCATCACTGCT
TCCCTCAGATTTGATGGAGCCCTCAATGTTGACCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTT
CCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTACTGTAGCAGAGATCACCAATG
CTTGCTTTGACCCAACCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGTTGCCTGTTGTACCGT
GGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGATTGGTG
CCCCACTGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTCCCTGGTGGAGACCTGGCCAAAGTACAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCGTTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTACACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGAGCAGATAGTGCCGAGGGAGAGGATGAAGGTGAAGAGTATTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 49 .52 RPM
SRP021940_embryo 148 .86 RPM
SRP021940_cerebellum 0 .00 RPM
SRP021940_testis 31 .46 RPM
SRP021940_placental_villous 105 .99 RPM
SRP021940_articular_cartilage 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039992 ortholog_one2many 1 retrogene
retro_btau_840,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Equus caballus ENSECAG00000013798 within_species_paralog 1 retrogene
retro_ecab_223,
Equus caballus ENSECAG00000014403 within_species_paralog 1 retrogene
retro_ecab_318,
Equus caballus ENSECAG00000014631 other_paralog 1 retrogene
retro_ecab_147,
Felis catus ENSFCAG00000024852 possible_ortholog 1 retrogene
retro_fcat_361,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Mus musculus ENSMUSG00000043091 ortholog_one2one 1 retrogene
retro_mmus_843,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Rattus norvegicus ENSRNOG00000015544 ortholog_one2one 3 retrogenes
retro_rnor_1193, retro_rnor_2260, retro_rnor_960,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1041 64.82 67.04
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Download FASTA sequences of all ENSECAG00000009504 retrocopies