Parental gene:

CNN3, ENSG00000117519

Aliases:None
Description:calponin 3, acidic [Source:HGNC Symbol;Acc:2157]
Organism:Human (Homo sapiens)
Coordinates:1:95362506..95392834(-)


>ENSG00000117519
ATGACCCACTTCAACAAGGGCCCTTCCTATGGGCTCTCGGCCGAAGTCAAGAACAAGATTGCTTCCAAGTATGATCATCA
GGCAGAAGAAGATCTTCGCAATTGGATAGAAGAGGTGACAGGCATGAGCATTGGCCCCAACTTCCAGCTGGGCTTAAAGG
ATGGCATCATCCTCTGCGAACTTATAAACAAGCTACAGCCAGGCTCAGTGAAGAAGGTCAACGAGTCCTCACTGAACTGG
CCTCAGTTGGAGAATATTGGCAACTTTATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACATATTCGAAGCAAA
TGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACTACTCTGGTGGCTCTAGCAGGTCTGGCTAAAACAAAAGGAT
TCCATACAACCATTGACATTGGAGTTAAGTATGCAGAAAAACAAACAAGACGTTTTGATGAAGGAAAATTAAAAGCTGGC
CAAAGTGTAATTGGTCTGCAGATGGGAACCAACAAATGTGCCAGCCAGGCAGGTATGACAGCTTACGGGACTAGGAGGCA
TCTTTATGATCCCAAAATGCAAACTGACAAACCTTTTGACCAGACCACAATTAGTCTGCAGATGGGCACTAATAAAGGAG
CCAGCCAGGCAGGGATGTTAGCACCAGGTACCAGAAGAGACATCTATGATCAGAAGCTAACATTACAGCCGGTGGACAAC
TCGACAATTTCCCTACAGATGGGTACCAACAAAGTTGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTTGGGCGGCAAGT
ATATGATCCCAAATACTGTGCTGCTCCTACAGAACCTGTCATTCACAACGGAAGCCAAGGAACAGGAACAAATGGTTCGG
AAATCAGTGATAGTGATTATCAGGCAGAATACCCTGATGAGTATCATGGCGAGTACCAGGATGACTACCCCAGAGATTAC
CAATATAGCGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
bodymap2_liver 119 .47 RPM
bodymap2_lung 1028 .52 RPM
bodymap2_breast 222 .51 RPM
bodymap2_adipose 281 .77 RPM
bodymap2_adrenal 315 .72 RPM
bodymap2_skeletal_muscle 28 .81 RPM
bodymap2_thyroid 184 .38 RPM
bodymap2_prostate 239 .90 RPM
bodymap2_colon 389 .52 RPM
bodymap2_testis 253 .03 RPM
bodymap2_brain 243 .05 RPM
bodymap2_heart 62 .58 RPM
bodymap2_white_blood_cells 2 .68 RPM
bodymap2_lymph_node 333 .77 RPM
bodymap2_ovary 459 .62 RPM
bodymap2_kidney 435 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016707 ortholog_one2one 1 retrogene
retro_amel_1412,
Bos taurus ENSBTAG00000020345 ortholog_one2one 1 retrogene
retro_btau_1211,
Callithrix jacchus ENSCJAG00000018128 possible_ortholog 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Echinops telfairi ENSETEG00000010095 ortholog_one2one 1 retrogene
retro_etel_638,
Homo sapiens ENSG00000064666 within_species_paralog 16 retrogenes
retro_hsap_1168, retro_hsap_1575, retro_hsap_1697, retro_hsap_2127, retro_hsap_2495, retro_hsap_255, retro_hsap_2576, retro_hsap_2764, retro_hsap_3505, retro_hsap_4168, retro_hsap_4170, retro_hsap_4175, retro_hsap_4257, retro_hsap_4269, retro_hsap_4326, retro_hsap_943,
Homo sapiens ENSG00000158710 within_species_paralog 1 retrogene
retro_hsap_4108,
Gorilla gorilla ENSGGOG00000013870 ortholog_one2one 1 retrogene
retro_ggor_2312,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Macaca mulatta ENSMMUG00000001690 ortholog_one2one 1 retrogene
retro_mmul_1747,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Mus musculus ENSMUSG00000053931 ortholog_one2one 2 retrogenes
retro_mmus_1052, retro_mmus_2544,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,
Vicugna pacos ENSVPAG00000004889 ortholog_one2one 2 retrogenes
retro_vpac_190, retro_vpac_449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3419 75.73 71.43
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Download FASTA sequences of all ENSG00000117519 retrocopies