RetrogeneDB ID: | retro_hsap_3419 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:6535042..6535737(+) | ||
Located in intron of: | ENSG00000216863 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218868 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSG00000117519 | ||
Aliases: | None | ||
Description: | calponin 3, acidic [Source:HGNC Symbol;Acc:2157] |
Percent Identity: | 75.73 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | QLGLKDGIILCELINKLQPGSVKKVNESSLNWPQ-LENIGNFIKAIQAYGMKPHDIFEANDLFE-NGNMT |
QLGLK.GI.LCELINKLQ.G..KKVNESSLNWPQ..ENIGNFIKAIQAYG.KP.DIFE..DLF...GN.T | |
Retrocopy | QLGLKEGILLCELINKLQAGPMKKVNESSLNWPQ<AENIGNFIKAIQAYGVKPRDIFEVSDLFR<DGNVT |
Parental | QVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN-KCASQAGMTAYGTR |
QVQ.TLVAL.G....K...TT.DI.VKY.EKQTRR.DEGKLKA...VIGL.MGTN...ASQAGM.AYGT. | |
Retrocopy | QVQATLVALVGWQAQKD--TTTDIRVKYTEKQTRR*DEGKLKAAETVIGLRMGTN<RSASQAGMSAYGTT |
Parental | -RHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVAS |
.RHLYDP.MQTDK.FDQTT..LQM.TNK..SQAGMLAPGTRR.IY.QKLTLQPVD..TISLQMGTNKVAS | |
Retrocopy | <RHLYDPNMQTDKRFDQTTVCLQMVTNKADSQAGMLAPGTRRAIYYQKLTLQPVDHLTISLQMGTNKVAS |
Parental | QKGMSVYGLGRQVYDPKYCAAPTEPVIHN |
QK.M.V.GLG.QVY..KYCAA.TE..IHN | |
Retrocopy | QKRMGVHGLGGQVYGRKYCAALTETIIHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 281 .77 RPM |
bodymap2_adrenal | 0 .02 RPM | 315 .72 RPM |
bodymap2_brain | 0 .00 RPM | 243 .05 RPM |
bodymap2_breast | 0 .00 RPM | 222 .51 RPM |
bodymap2_colon | 0 .00 RPM | 389 .52 RPM |
bodymap2_heart | 0 .00 RPM | 62 .58 RPM |
bodymap2_kidney | 0 .00 RPM | 435 .36 RPM |
bodymap2_liver | 0 .00 RPM | 119 .47 RPM |
bodymap2_lung | 0 .00 RPM | 1028 .52 RPM |
bodymap2_lymph_node | 0 .00 RPM | 333 .77 RPM |
bodymap2_ovary | 0 .00 RPM | 459 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 239 .90 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .81 RPM |
bodymap2_testis | 0 .00 RPM | 253 .03 RPM |
bodymap2_thyroid | 0 .00 RPM | 184 .38 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 2 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2323 |
Gorilla gorilla | retro_ggor_2312 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016707 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020345 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Homo sapiens | ENSG00000064666 | 16 retrocopies | |
Homo sapiens | ENSG00000117519 | 1 retrocopy |
retro_hsap_3419 ,
|
Homo sapiens | ENSG00000158710 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013870 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001690 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053931 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .06 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .07 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .02 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |