RetrogeneDB ID: | retro_vpac_190 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2649:252358..253271(-) | ||
Located in intron of: | ENSVPAG00000002313 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSVPAG00000004889 | ||
Aliases: | None | ||
Description: | calponin 3, acidic [Source:HGNC Symbol;Acc:2157] |
Percent Identity: | 71.88 % |
Parental protein coverage: | 98.71 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 7 |
Parental | KYDHQAEEDLRNWIEEVTGMS-IGTNF-QLGLKDGIILCELINKLQPGSVKK-VNESSLNWPQLENIGNF |
.YDHQ.EEDL.....EVTGMS..G.NF.QLG.KDGIIL.E...K..PGSVK..VNESS...PQLENIGNF | |
Retrocopy | EYDHQ-EEDLTVG*REVTGMS<LGINF<QLG*KDGIIL*EFMTKPLPGSVKD>VNESSVS*PQLENIGNF |
Parental | IKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKA |
IKAIQAYGMKPHDIFEAN.LFENGNMTQVQT.LV.LA.L.KTKG.H.TIDIGVKYAEK....FDEGKLK. | |
Retrocopy | IKAIQAYGMKPHDIFEANGLFENGNMTQVQTILVVLADLTKTKGLHATIDIGVKYAEK*SC-FDEGKLKV |
Parental | GQSVIGLQMGTNKCA-SQAGMTAYGTRRHLYD-PKMQTDKPF-DQTTISLQMGTNKGASQAGMLAPGTRR |
GQS.IGL.MGTN.C..SQAGM.AYGT..HLYD.PK......F.DQ..IS.Q.G..KGASQ.G.LA.GT.R | |
Retrocopy | GQSMIGLPMGTNRCS>SQAGMIAYGTGKHLYD>PKCKLTNLF>DQAMISVQIGAKKGASQVGVLALGTPR |
Parental | DIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSV-YGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEI |
D.YDQ.LTLQPV..STISL.MGTNK..SQKGMSV...LG.QVYD.KYCAAPTEPVIHNGSQGTGT.G.EI | |
Retrocopy | DNYDQNLTLQPVGSSTISLRMGTNKITSQKGMSV<VKLGQQVYDLKYCAAPTEPVIHNGSQGTGTKGLEI |
Parental | SDSDYQAEYPEEYRGEYQDDYPREYQYGDQGID |
S..DYQAEY..E..G.Y.D.YP...QYGDQG.D | |
Retrocopy | SGNDYQAEYADE*HGTYHDAYPKDDQYGDQGTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016707 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020345 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Homo sapiens | ENSG00000117519 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013870 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001690 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053931 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |
retro_vpac_190 , retro_vpac_449,
|