Parental gene:

CNN3, ENSVPAG00000004889

Aliases:None
Description:calponin 3, acidic [Source:HGNC Symbol;Acc:2157]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_1766:205994..211485(-)


>ENSVPAG00000004889
ATTGCTTCCAAGTATGATCACCAGGCAGAAGAAGATCTTCGCAACTGGATAGAGGAGGTGACGGGCATGAGCATCGGCAC
CAACTTCCAGCTAGGCTTGAAGGACGGCATAATCCTCTGCGAGCTCATAAACAAGCTACAGCCAGGCTCAGTGAAGAAGG
TCAACGAGTCCTCGTTAAACTGGCCTCAGCTGGAGAATATTGGCAACTTCATCAAAGCTATTCAGGCTTATGGTATGAAG
CCACACGACATATTTGAAGCAAATGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACTACGCTGGTGGCCCTAGC
AGGTCTGGCTAAAACAAAAGGATTCCATACAACCATCGACATTGGAGTTAAGTATGCAGAAAAACAAACAAGACGTTTTG
ATGAAGGAAAATTAAAAGCTGGCCAGAGTGTGATTGGTTTACAGATGGGAACCAACAAGTGCGCCAGCCAAGCAGGCATG
ACAGCCTATGGGACGAGGAGGCATCTTTACGATCCCAAAATGCAGACCGACAAACCTTTTGATCAGACCACGATCAGCCT
GCAGATGGGCACCAACAAAGGAGCCAGCCAGGCGGGGATGTTAGCACCAGGTACCCGGAGAGACATCTACGATCAGAAGC
TAACATTGCAACCCGTGGACAACTCGACGATTTCTCTACAGATGGGCACCAACAAAGTCGCTTCCCAGAAAGGAATGAGT
GTGTATGGGCTTGGGCGGCAAGTATATGATCCCAAATACTGTGCTGCTCCCACAGAACCCGTCATTCACAATGGAAGCCA
AGGGACGGGAACAAATGGGTCGGAAATCAGTGATAGCGATTATCAGGCAGAGTACCCAGAGGAGTACCGTGGCGAGTACC
AGGACGACTACCCCAGGGAGTACCAGTACGGCGACCAGGGCATCGACTACTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016707 ortholog_one2one 1 retrogene
retro_amel_1412,
Bos taurus ENSBTAG00000020345 ortholog_one2one 1 retrogene
retro_btau_1211,
Callithrix jacchus ENSCJAG00000018128 ortholog_one2many 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Equus caballus ENSECAG00000020188 ortholog_one2one 1 retrogene
retro_ecab_655,
Echinops telfairi ENSETEG00000010095 ortholog_one2one 1 retrogene
retro_etel_638,
Homo sapiens ENSG00000117519 ortholog_one2one 1 retrogene
retro_hsap_3419,
Gorilla gorilla ENSGGOG00000013870 ortholog_one2one 1 retrogene
retro_ggor_2312,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Macaca mulatta ENSMMUG00000001690 ortholog_one2one 1 retrogene
retro_mmul_1747,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Mus musculus ENSMUSG00000053931 ortholog_one2one 2 retrogenes
retro_mmus_1052, retro_mmus_2544,
Nomascus leucogenys ENSNLEG00000011207 ortholog_one2one 5 retrogenes
retro_nleu_122, retro_nleu_1342, retro_nleu_2698, retro_nleu_480, retro_nleu_668,
Pan troglodytes ENSPTRG00000000979 ortholog_one2one 15 retrogenes
retro_ptro_1061, retro_ptro_1149, retro_ptro_1247, retro_ptro_1447, retro_ptro_1505, retro_ptro_1554, retro_ptro_1871, retro_ptro_215, retro_ptro_2323, retro_ptro_2377, retro_ptro_2831, retro_ptro_2894, retro_ptro_3007, retro_ptro_483, retro_ptro_653,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,
Tarsius syrichta ENSTSYG00000010749 ortholog_one2one 2 retrogenes
retro_tsyr_1458, retro_tsyr_1907,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_190 71.88 98.71
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2. retro_vpac_449 66.35 68.06
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Download FASTA sequences of all ENSVPAG00000004889 retrocopies