Parental gene:

CNN3, ENSBTAG00000020345

Aliases:None
Description:Calponin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q32L92]
Organism:Cow (Bos taurus)
Coordinates:3:48763974..48794136(+)


>ENSBTAG00000020345
ATGACCCACTTCAACAAGGGCCCTTCCTATGGGCTCTCGGCCGAGGTCAAGAACAAGATTGCTTCCAAGTATGATCATCA
GGCAGAAGAAGATCTCCGCAATTGGATAGAAGAGGTGACAGGCATGAGCATTGGCGCCAACTTCCAGCTGGGCTTGAAAG
ATGGCATTATCCTCTGCGAACTCATAAACAAGCTACAGCCAGGCTCAGTGAAGAAGGTCAATGAGTCCTCATTAAACTGG
CCTCAGTTGGAGAATATCGGCAACTTTATTAAAGCTATTCAGGCTTATGGCATGAAGCCACATGACATATTTGAAGCAAA
TGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACTACGTTGGTGGCCCTAGCAGGTCTGGCCAAAACAAAAGGAT
TCCATACAACCATTGACATTGGAGTTAAGTATGCAGAAAAACAAACAAGACGCTTTGATGAAGGAAAATTAAAAGCTGGC
CAGAGTGTAATTGGTTTGCAGATGGGAACCAACAAATGCGCCAGCCAAGCAGGTATGACAGCCTATGGGACGAGGAGGCA
CCTTTATGATCCCAAAATGCAAACTGACAAACCTTTTGATCAGACCACAATTAGCCTGCAAATGGGCACCAACAAAGGAG
CCAGCCAGGCGGGAATGTTAGCACCGGGTACCCGAAGAGACATCTACGATCAGAAGCTAACATTACAACCCGTGGACAAC
TCGACGATTTCCCTACAGATGGGTACCAACAAAGTCGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTTGGGCGGCAAGT
GTATGATCCCAAATACTGTGCTGCTCCCACAGAACCTGTCATTCACAACGGAAGCCAAGGAACAGGAACCAATGGGTCAG
AAATCAGTGATAGTGATTATCAGGCAGAATACCCCGATGAATATCATGGCGAGTACCAAGATGACTACCCCAGAGATTAC
CAGTATGGTGACCAAGGCATTGATTATTAG

Library Parental gene expression (RPM)
ERP005899_liver 17 .52 RPM
ERP005899_muscle 24 .81 RPM
SRP017611_brain 46 .36 RPM
SRP017611_kidney 88 .67 RPM
SRP017611_liver 7 .10 RPM
SRP030211_testis 6 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016707 ortholog_one2one 1 retrogene
retro_amel_1412,
Bos taurus ENSBTAG00000002068 within_species_paralog 1 retrogene
retro_btau_1701,
Bos taurus ENSBTAG00000020764 within_species_paralog 1 retrogene
retro_btau_612,
Callithrix jacchus ENSCJAG00000018128 possible_ortholog 3 retrogenes
retro_cjac_1331, retro_cjac_533, retro_cjac_861,
Echinops telfairi ENSETEG00000010095 ortholog_one2one 1 retrogene
retro_etel_638,
Homo sapiens ENSG00000117519 ortholog_one2one 1 retrogene
retro_hsap_3419,
Gorilla gorilla ENSGGOG00000013870 ortholog_one2one 1 retrogene
retro_ggor_2312,
Macropus eugenii ENSMEUG00000002921 possible_ortholog 2 retrogenes
retro_meug_2020, retro_meug_42,
Macaca mulatta ENSMMUG00000001690 ortholog_one2one 1 retrogene
retro_mmul_1747,
Monodelphis domestica ENSMODG00000004326 ortholog_one2one 1 retrogene
retro_mdom_442,
Mus musculus ENSMUSG00000053931 ortholog_one2one 2 retrogenes
retro_mmus_1052, retro_mmus_2544,
Sorex araneus ENSSARG00000012874 possible_ortholog 1 retrogene
retro_sara_582,
Sarcophilus harrisii ENSSHAG00000002670 ortholog_one2one 1 retrogene
retro_shar_567,
Vicugna pacos ENSVPAG00000004889 ortholog_one2one 2 retrogenes
retro_vpac_190, retro_vpac_449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1211 94.22 100.00
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Download FASTA sequences of all ENSBTAG00000020345 retrocopies