Parental gene:

HSBP1, ENSLACG00000022519

Aliases:None
Description:heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127141.1:900045..913141(-)


>ENSLACG00000022519
ATGTCGGAGACAGATCCTAAGACGGTTCAGGACCTGACCGCTGTTGTACAGACACTCCTTCAACAAATGCAGGACAAGTT
TCAAACTATGTCTGATCAGATCATTGGACGAATTGATGAGATGAGCACTCGTATTGATGACCTAGAGAAGAATATTGCAG
ACCTGATGACACAAGCAGGAGTGGAAGAAATTGAAGGAGAAAACAAGGTTGCCAAATAG

Library Parental gene expression (RPM)
DRP000627_gill 15 .22 RPM
DRP000627_kidney 17 .77 RPM
DRP000627_pectoral_fin 13 .54 RPM
DRP000627_pelvic_fin 18 .30 RPM
DRP000627_pharynx 22 .34 RPM
DRP000627_tail_muscle 15 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006485 ortholog_one2many 3 retrogenes
retro_amel_20, retro_amel_261, retro_amel_646,
Canis familiaris ENSCAFG00000019973 ortholog_one2one 4 retrogenes
retro_cfam_1712, retro_cfam_395, retro_cfam_772, retro_cfam_874,
Callithrix jacchus ENSCJAG00000000641 ortholog_one2one 5 retrogenes
retro_cjac_1824, retro_cjac_2156, retro_cjac_3997, retro_cjac_708, retro_cjac_762,
Dasypus novemcinctus ENSDNOG00000015303 ortholog_one2many 3 retrogenes
retro_dnov_2535, retro_dnov_607, retro_dnov_7,
Equus caballus ENSECAG00000026920 ortholog_one2one 1 retrogene
retro_ecab_580,
Homo sapiens ENSG00000230989 ortholog_one2one 2 retrogenes
retro_hsap_3076, retro_hsap_3367,
Loxodonta africana ENSLAFG00000014112 ortholog_one2many 2 retrogenes
retro_lafr_108, retro_lafr_15,
Macropus eugenii ENSMEUG00000011483 ortholog_one2many 2 retrogenes
retro_meug_1525, retro_meug_47,
Myotis lucifugus ENSMLUG00000007636 ortholog_one2one 1 retrogene
retro_mluc_653,
Macaca mulatta ENSMMUG00000020115 ortholog_one2many 4 retrogenes
retro_mmul_169, retro_mmul_2120, retro_mmul_2184, retro_mmul_291,
Nomascus leucogenys ENSNLEG00000026776 ortholog_one2one 3 retrogenes
retro_nleu_1827, retro_nleu_2018, retro_nleu_963,
Otolemur garnettii ENSOGAG00000015437 ortholog_one2one 7 retrogenes
retro_ogar_1493, retro_ogar_2454, retro_ogar_2898, retro_ogar_488, retro_ogar_558, retro_ogar_796, retro_ogar_826,
Ochotona princeps ENSOPRG00000005658 ortholog_one2one 1 retrogene
retro_opri_1092,
Procavia capensis ENSPCAG00000004899 ortholog_one2one 2 retrogenes
retro_pcap_322, retro_pcap_445,
Pan troglodytes ENSPTRG00000008401 ortholog_one2one 3 retrogenes
retro_ptro_2075, retro_ptro_2288, retro_ptro_920,
Pteropus vampyrus ENSPVAG00000006994 ortholog_one2one 1 retrogene
retro_pvam_1024,
Tupaia belangeri ENSTBEG00000006478 ortholog_one2many 1 retrogene
retro_tbel_25,
Tarsius syrichta ENSTSYG00000006648 ortholog_one2one 7 retrogenes
retro_tsyr_1351, retro_tsyr_1428, retro_tsyr_1655, retro_tsyr_424, retro_tsyr_646, retro_tsyr_756, retro_tsyr_824,
Tursiops truncatus ENSTTRG00000008666 ortholog_one2one 3 retrogenes
retro_ttru_1618, retro_ttru_849, retro_ttru_866,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_96 55.77 72.22
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Download FASTA sequences of all ENSLACG00000022519 retrocopies