Parental gene:

Hnrnpa3, ENSMUSG00000059005

Aliases:Hnrnpa3, 2410013L13Rik, 2610209F03Rik, 2610510D13Rik, Hnrpa3
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Organism:Mouse (Mus musculus)
Coordinates:2:75659260..75669407(+)


>ENSMUSG00000059005
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCTGACTCCGGCCGTCGCCGCCGCCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTT
GTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACC
GAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGAC
AGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGA
GAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGA
GGAAACTTTGGTGGAAGAGGTGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATA
TAATGGATTTGGAGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGAC
CAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGT
GGAGGTAACTATGGTGGTGGTGGAAACTATAATGACTTTGGAAATTATAGTGGACAGCAACAATCAAATTATGGACCCAT
GAAGGGGGGCAGTTTTGGTGGAAGAAGCTCAGGCAGTCCCTATGGTGGTGGCTATGGATCTGGAGGTGGAAGTGGTGGAT
ATGGTAGCAGAAGGTTTTAA

Library Parental gene expression (RPM)
SRP007412_brain 111 .18 RPM
SRP007412_cerebellum 170 .43 RPM
SRP007412_heart 112 .60 RPM
SRP007412_kidney 187 .13 RPM
SRP007412_liver 100 .71 RPM
SRP007412_testis 196 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021580 ortholog_one2many 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Canis familiaris ENSCAFG00000013497 possible_ortholog 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Dasypus novemcinctus ENSDNOG00000019022 ortholog_one2many 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000012146 ortholog_one2many 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Homo sapiens ENSG00000170144 ortholog_one2many 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 ortholog_one2many 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 ortholog_one2many 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 ortholog_one2many 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mus musculus ENSMUSG00000004980 other_paralog 1 retrogene
retro_mmus_573,
Mus musculus ENSMUSG00000046434 within_species_paralog 3 retrogenes
retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Otolemur garnettii ENSOGAG00000028132 possible_ortholog 7 retrogenes
retro_ogar_1869, retro_ogar_1924, retro_ogar_2222, retro_ogar_2590, retro_ogar_3215, retro_ogar_600, retro_ogar_814,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Pteropus vampyrus ENSPVAG00000010380 possible_ortholog 2 retrogenes
retro_pvam_1077, retro_pvam_326,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Sus scrofa ENSSSCG00000015988 possible_ortholog 6 retrogenes
retro_sscr_1110, retro_sscr_1152, retro_sscr_391, retro_sscr_621, retro_sscr_764, retro_sscr_927,
Ictidomys tridecemlineatus ENSSTOG00000025125 ortholog_one2many 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_60 99.44 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmus_133 96.36 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmus_210 100.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmus_1359 84.96 63.85
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmus_1409 78.22 58.84
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmus_3635 81.94 59.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000059005 retrocopies