Parental gene:

Rpl3, ENSMUSG00000060036

Aliases:Rpl3, F2, J1
Description:ribosomal protein L3 [Source:MGI Symbol;Acc:MGI:1351605]
Organism:Mouse (Mus musculus)
Coordinates:15:80077780..80083406(-)


>ENSMUSG00000060036
ATGTCTCACAGGAAATTCTCAGCTCCCAGGCATGGGTCCTTGGGCTTCCTGCCTCGCAAGCGCAGCAGCCGGCATCGTGG
GAAAGTGAAGAGCTTCCCTAAGGATGACGCTTCCAAGCCCGTTCACCTCACAGCCTTTCTGGGTTACAAGGCTGGCATGA
CCCACATCGTCCGGGAAGTTGACAGGCCAGGATCTAAGGTGAACAAGAAAGAAGTCGTGGAGGCTGTGACCATTGTGGAA
ACTCCCCCAATGGTGGTTGTGGGCATTGTGGGATATGTTGAGACCCCACGAGGCCTCCGGACCTTCAAGACTGTATTTGC
TGAGCACATCAGCGATGAGTGTAAAAGGCGCTTCTATAAGAACTGGCACAAGTCTAAGAAGAAGGCTTTCACCAAGTACT
GTAAGAAATGGCAGGATGACACAGGCAAGAAGCAGCTGGAGAAGGACTTCAACAGCATGAAGAAGTACTGCCAGGTCATC
CGCATCATTGCCCACACTCAGATGCGTCTGCTTCCTCTACGCCAGAAGAAGGCACACTTGATGGAGATCCAGGTGAATGG
AGGCACTGTGGCTGAGAAGCTCGACTGGGCCCGAGAGCGGCTGGAGCAGCAGGTTCCTGTGAACCAGGTGTTTGGGCAGG
ATGAGATGATTGATGTCATTGGCGTGACAAAAGGCAAAGGGTACAAAGGGGTAACCAGTCGTTGGCATACAAAGAAACTG
CCCCGAAAGACCCATCGAGGTTTGCGCAAAGTTGCCTGTATTGGAGCCTGGCACCCTGCCCGTGTTGCCTTCTCTGTGGC
TCGAGCTGGGCAGAAAGGCTACCATCACCGAACAGAGATTAACAAGAAGATTTACAAGATTGGTCAAGGCTACCTCATCA
AGGATGGCAAACTGATCAAGAACAATGCATCTACTGACTATGACTTGTCTGACAAGAGCATCAACCCACTGGGTGGCTTT
GTGCATTATGGTGAGGTGACCAATGACTTCATCATGCTCAAAGGCTGTGTGGTGGGGACCAAGAAGCGAGTACTTACTCT
TCGTAAGTCCTTGCTGGTTCAGACCAAACGTCGGGCCCTGGAGAAGATTGACCTGAAGTTCATTGACACCACCTCCAAAT
TTGGCCATGGTCGCTTCCAGACCATGGAGGAGAAGAAAGCATTTATGGGACCACTCAAGAAAGATCGCATTGCCAAGGAG
GAAGGAGCTTGA

Library Parental gene expression (RPM)
SRP007412_brain 182 .07 RPM
SRP007412_cerebellum 112 .33 RPM
SRP007412_heart 83 .24 RPM
SRP007412_kidney 150 .53 RPM
SRP007412_liver 142 .14 RPM
SRP007412_testis 55 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010853 ortholog_one2one 1 retrogene
retro_amel_1115,
Bos taurus ENSBTAG00000003228 possible_ortholog 3 retrogenes
retro_btau_1644, retro_btau_281, retro_btau_341,
Canis familiaris ENSCAFG00000001346 ortholog_one2many 1 retrogene
retro_cfam_97,
Callithrix jacchus ENSCJAG00000016276 possible_ortholog 6 retrogenes
retro_cjac_1198, retro_cjac_1972, retro_cjac_2157, retro_cjac_2264, retro_cjac_3079, retro_cjac_823,
Dasypus novemcinctus ENSDNOG00000001121 ortholog_one2one 4 retrogenes
retro_dnov_1359, retro_dnov_1641, retro_dnov_652, retro_dnov_788,
Erinaceus europaeus ENSEEUG00000014661 ortholog_one2one 2 retrogenes
retro_eeur_488, retro_eeur_557,
Echinops telfairi ENSETEG00000011380 ortholog_one2one 5 retrogenes
retro_etel_1646, retro_etel_2199, retro_etel_2212, retro_etel_657, retro_etel_972,
Felis catus ENSFCAG00000005820 ortholog_one2one 1 retrogene
retro_fcat_1809,
Gorilla gorilla ENSGGOG00000002326 possible_ortholog 10 retrogenes
retro_ggor_1043, retro_ggor_1295, retro_ggor_1582, retro_ggor_1822, retro_ggor_2329, retro_ggor_2616, retro_ggor_2713, retro_ggor_2736, retro_ggor_2955, retro_ggor_36,
Macropus eugenii ENSMEUG00000009789 ortholog_one2one 26 retrogenes
retro_meug_1045, retro_meug_118, retro_meug_1210, retro_meug_1403, retro_meug_1452, retro_meug_1492, retro_meug_1516, retro_meug_1554, retro_meug_1589, retro_meug_1604, retro_meug_1698, retro_meug_1856, retro_meug_2150, retro_meug_2151, retro_meug_221, retro_meug_367, retro_meug_412, retro_meug_461, retro_meug_592, retro_meug_677, retro_meug_683, retro_meug_831, retro_meug_851, retro_meug_886, retro_meug_889, retro_meug_898,
Myotis lucifugus ENSMLUG00000023711 ortholog_one2one 1 retrogene
retro_mluc_810,
Macaca mulatta ENSMMUG00000010029 possible_ortholog 4 retrogenes
retro_mmul_1170, retro_mmul_149, retro_mmul_2334, retro_mmul_973,
Monodelphis domestica ENSMODG00000009539 ortholog_one2one 2 retrogenes
retro_mdom_380, retro_mdom_408,
Mustela putorius furo ENSMPUG00000013271 ortholog_one2one 3 retrogenes
retro_mputfur_1284, retro_mputfur_199, retro_mputfur_774,
Oryctolagus cuniculus ENSOCUG00000027712 possible_ortholog 4 retrogenes
retro_ocun_105, retro_ocun_179, retro_ocun_1893, retro_ocun_558,
Otolemur garnettii ENSOGAG00000000032 ortholog_one2one 7 retrogenes
retro_ogar_1264, retro_ogar_1679, retro_ogar_2096, retro_ogar_2122, retro_ogar_2448, retro_ogar_3431, retro_ogar_960,
Ochotona princeps ENSOPRG00000013088 ortholog_one2one 3 retrogenes
retro_opri_1004, retro_opri_1014, retro_opri_432,
Procavia capensis ENSPCAG00000010642 ortholog_one2one 1 retrogene
retro_pcap_115,
Pongo abelii ENSPPYG00000011837 possible_ortholog 10 retrogenes
retro_pabe_1113, retro_pabe_1861, retro_pabe_2167, retro_pabe_2743, retro_pabe_2985, retro_pabe_3170, retro_pabe_3318, retro_pabe_3349, retro_pabe_3696, retro_pabe_3761,
Pteropus vampyrus ENSPVAG00000003204 ortholog_one2one 2 retrogenes
retro_pvam_1220, retro_pvam_1390,
Rattus norvegicus ENSRNOG00000016896 ortholog_one2one 2 retrogenes
retro_rnor_1333, retro_rnor_731,
Sarcophilus harrisii ENSSHAG00000003212 ortholog_one2many 2 retrogenes
retro_shar_154, retro_shar_662,
Tupaia belangeri ENSTBEG00000005989 ortholog_one2one 1 retrogene
retro_tbel_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_361 76.78 52.11
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2. retro_mmus_897 81.82 59.55
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3. retro_mmus_1148 95.09 100.00
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4. retro_mmus_1158 84.33 99.75
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5. retro_mmus_1164 84.21 99.01
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6. retro_mmus_1165 84.46 99.01
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7. retro_mmus_1167 84.21 99.01
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8. retro_mmus_1183 84.71 99.01
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9. retro_mmus_1238 84.46 99.01
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10. retro_mmus_1239 84.33 99.75
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11. retro_mmus_1240 82.34 99.75
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12. retro_mmus_1241 82.59 99.75
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13. retro_mmus_1242 83.71 99.01
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14. retro_mmus_1243 84.21 99.01
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15. retro_mmus_1244 84.21 99.01
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16. retro_mmus_1245 84.46 99.01
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17. retro_mmus_1246 84.46 99.01
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18. retro_mmus_1465 73.28 64.52
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19. retro_mmus_1548 78.52 63.52
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20. retro_mmus_2231 87.50 61.54
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21. retro_mmus_2275 95.32 100.00
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22. retro_mmus_2276 95.32 100.00
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23. retro_mmus_2474 76.52 56.58
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24. retro_mmus_2501 96.03 100.00
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25. retro_mmus_2547 90.49 65.26
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26. retro_mmus_2849 98.76 100.00
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27. retro_mmus_3125 79.47 62.78
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28. retro_mmus_3215 91.96 70.97
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29. retro_mmus_3422 100.00 100.00
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30. retro_mmus_3467 97.78 100.00
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Download FASTA sequences of all ENSMUSG00000060036 retrocopies