RetrogeneDB ID: | retro_pcap_115 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_689:56715..57396(+) | ||
Located in intron of: | ENSPCAG00000002189 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSPCAG00000010642 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 92.51 % |
Parental protein coverage: | 56.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HKSKKKAFTKYCKKWQDDDGKKQLEKDFSSMKKYCQVIRIIAHTQMRLLPLRQKKAHLMEIQVNGGTVAE |
HKSKK.AFTK.CKKWQDDDGKKQLEKDFSSMKKYCQVIRII.HTQMRLLPLRQKKA.LMEIQVNGGTVAE | |
Retrocopy | HKSKKAAFTKNCKKWQDDDGKKQLEKDFSSMKKYCQVIRIIVHTQMRLLPLRQKKARLMEIQVNGGTVAE |
Parental | KVDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARV |
KVDWA.ERLEQQVPVSQVFGQ.EMIDVIGVTKGKGYK.VTSRWHTKKLPRKTHRGL.KVAC.GA.HPA.V | |
Retrocopy | KVDWAWERLEQQVPVSQVFGQNEMIDVIGVTKGKGYKEVTSRWHTKKLPRKTHRGLHKVACFGA*HPAHV |
Parental | AFSVARAGQKGYHHRTEINKKIYKMGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVM |
.FSVARAGQKGYHHRTEINKKIYKMGQGYLI.D..LIKNNASTDYDLSDKSINPLGGFVHY.EVTNDFVM | |
Retrocopy | TFSVARAGQKGYHHRTEINKKIYKMGQGYLIRDSELIKNNASTDYDLSDKSINPLGGFVHYSEVTNDFVM |
Parental | LKGCVVGTKKRVLTLRK |
LKGCVVGTKKRVLTL.K | |
Retrocopy | LKGCVVGTKKRVLTLHK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |