Parental gene:

PGAM1, ENSPPYG00000002530

Aliases:None
Description:phosphoglycerate mutase 1 [Source:RefSeq peptide;Acc:NP_001127164]
Organism:Orangutan (Pongo abelii)
Coordinates:10:96406705..96413862(+)


>ENSPPYG00000002530
ATGGCCGCCTACAAACTGGTGCTGATCCGGCACGGCGAGAGCGCATGGAACCTGGAGAACCGCTTCAGCGGCTGGTACGA
CGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGCTACGAGATGCTGGCTATGAGTTTGACA
TTTGCTTCACCTCAGTGCAGAAGAGAGCGATCCGGACCCTCTGGACAGTGCTAGATGCCATTGATCAGATGTGGCTGCCA
GTGGTGAGGACTTGGCGCCTCAATGAGCGGCACTATGGGGGTCTAACCGGTCTCAATAAAGCAGAAACTGCTGCAAAGCA
TGGTGAGGCCCAGGTGAAGATCTGGAGGCGCTCCTATGATGTCCCACCACCTCCGATGGAGCCCGACCATCCTTTCTACA
GCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACAGAAGATCAGCTACCCTCCTGTGAGAGTCTGAAGGATACTATT
GCCAGAGCTCTGCCCTTCTGGAATGAAGAAATAGTTCCCCAGATCAAGGAGGGGAAACGTGTACTGATTGCAGCCCATGG
CAACAGCCTCCGGGGCATTGTCAAGCATCTGGAGGGTCTCTCTGAAGAGGCTATCATGGAGCTGAACCTGCCGACTGGTA
TTCCCATTGTCTATGAATTGGACAAGAACTTGAAGCCTATCAAGCCCATGCAGTTTCTGGGGGATGAAGAGACGGTGCGC
AAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 414 .74 RPM
SRP007412_cerebellum 300 .72 RPM
SRP007412_heart 42 .14 RPM
SRP007412_kidney 141 .90 RPM
SRP007412_liver 89 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016575 ortholog_one2one 1 retrogene
retro_cjac_370,
Erinaceus europaeus ENSEEUG00000005630 possible_ortholog 1 retrogene
retro_eeur_680,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 ortholog_one2one 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2many 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 possible_ortholog 1 retrogene
retro_mmur_135,
Myotis lucifugus ENSMLUG00000009117 possible_ortholog 6 retrogenes
retro_mluc_1280, retro_mluc_1595, retro_mluc_1741, retro_mluc_2246, retro_mluc_632, retro_mluc_745,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Mustela putorius furo ENSMPUG00000017045 ortholog_one2one 1 retrogene
retro_mputfur_1409,
Mus musculus ENSMUSG00000011752 possible_ortholog 6 retrogenes
retro_mmus_1741, retro_mmus_2221, retro_mmus_3012, retro_mmus_411, retro_mmus_729, retro_mmus_769,
Oryctolagus cuniculus ENSOCUG00000005679 possible_ortholog 5 retrogenes
retro_ocun_1016, retro_ocun_1081, retro_ocun_350, retro_ocun_706, retro_ocun_976,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Sarcophilus harrisii ENSSHAG00000018230 possible_ortholog 1 retrogene
retro_shar_323,
Sus scrofa ENSSSCG00000010517 ortholog_one2one 1 retrogene
retro_sscr_373,
Tupaia belangeri ENSTBEG00000005913 possible_ortholog 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_671 95.33 59.06
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2. retro_pabe_1325 89.23 76.38
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3. retro_pabe_2309 82.65 82.68
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4. retro_pabe_2554 60.25 62.60
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5. retro_pabe_2639 70.11 67.72
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6. retro_pabe_2881 86.79 83.46
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7. retro_pabe_3389 79.50 62.99
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8. retro_pabe_3639 75.45 87.80
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9. retro_pabe_3749 77.93 57.09
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Download FASTA sequences of all ENSPPYG00000002530 retrocopies