Parental gene:

ENSOCUG00000005679

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:18:45635520..45637896(+)


>ENSOCUG00000005679
GACGCTGGCTATGAATTTGACATCTGCTTCACCTCGGTGCAGAAAAGAGCCATCCGGACCCTCTGGACGGTGCTGGATGC
CATTGACCAGATGTGGCTGCCAGTCGTGAGGACTTGGCGCCTCAACGAGCGGCACTATGGGGGTCTGACCGGCCTCAATA
AGGCAGAGACTGCTGCCAAGCATGGTGAGGCCCAGGTGAAGATCTGGCGGCGCTCCTATGACGTCCCCCCGCCCCCCATG
GAGCCTGACCATCCCTTCTACAGCAACATCAGTAAGGATCGCAGGTATGCAGACCTCACTGAAGATCAGCTGCCTTCCTG
TGAAAGTCTGAAGGACACTATAGCCAGAGCCCTGCCCTTCTGGAATGAAGAGATTGTGCCCCAGATCAAGGAGGGCAAAC
GGGTACTGATCGCGGCCCACGGCAACAGCCTTCGGGGCATTGTCAAGCACCTGGAGGGTCTCTCTGAAGAGGCCATCATG
GAGCTGAACCTGCCGACTGGTATCCCCATTGTCTATGAACTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCT
GGGGGATGAAGAGACCGTGCGCAAAGCCATGGAAGCTGTGGCTGCCCAGGGCAAGGCCAAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 183 .11 RPM
SRP017611_kidney 100 .24 RPM
SRP017611_liver 25 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012697 possible_ortholog 2 retrogenes
retro_btau_1611, retro_btau_472,
Canis familiaris ENSCAFG00000009062 possible_ortholog 1 retrogene
retro_cfam_1297,
Callithrix jacchus ENSCJAG00000016575 possible_ortholog 1 retrogene
retro_cjac_370,
Cavia porcellus ENSCPOG00000006844 possible_ortholog 4 retrogenes
retro_cpor_158, retro_cpor_539, retro_cpor_605, retro_cpor_660,
Echinops telfairi ENSETEG00000002467 possible_ortholog 1 retrogene
retro_etel_1595,
Homo sapiens ENSG00000171314 possible_ortholog 12 retrogenes
retro_hsap_1048, retro_hsap_1052, retro_hsap_1142, retro_hsap_2235, retro_hsap_2604, retro_hsap_3083, retro_hsap_3488, retro_hsap_4249, retro_hsap_4686, retro_hsap_4821, retro_hsap_885, retro_hsap_913,
Gorilla gorilla ENSGGOG00000028602 possible_ortholog 13 retrogenes
retro_ggor_1220, retro_ggor_1500, retro_ggor_1667, retro_ggor_1824, retro_ggor_2061, retro_ggor_2118, retro_ggor_2353, retro_ggor_2849, retro_ggor_3005, retro_ggor_3034, retro_ggor_716, retro_ggor_738, retro_ggor_827,
Loxodonta africana ENSLAFG00000015979 ortholog_one2one 1 retrogene
retro_lafr_886,
Microcebus murinus ENSMICG00000007657 ortholog_one2one 1 retrogene
retro_mmur_135,
Macaca mulatta ENSMMUG00000020027 possible_ortholog 1 retrogene
retro_mmul_119,
Monodelphis domestica ENSMODG00000004242 possible_ortholog 4 retrogenes
retro_mdom_1342, retro_mdom_1893, retro_mdom_610, retro_mdom_668,
Pongo abelii ENSPPYG00000002530 possible_ortholog 9 retrogenes
retro_pabe_1325, retro_pabe_2309, retro_pabe_2554, retro_pabe_2639, retro_pabe_2881, retro_pabe_3389, retro_pabe_3639, retro_pabe_3749, retro_pabe_671,
Rattus norvegicus ENSRNOG00000050585 possible_ortholog 7 retrogenes
retro_rnor_1669, retro_rnor_2241, retro_rnor_2275, retro_rnor_2361, retro_rnor_2568, retro_rnor_691, retro_rnor_703,
Tupaia belangeri ENSTBEG00000005913 ortholog_one2one 5 retrogenes
retro_tbel_1677, retro_tbel_1708, retro_tbel_2756, retro_tbel_3667, retro_tbel_563,
Drosophila melanogaster FBgn0014869 ortholog_many2many 1 retrogene
retro_dmel_57,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_350 73.14 82.21
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2. retro_ocun_706 71.01 65.87
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3. retro_ocun_976 62.50 68.75
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4. retro_ocun_1016 61.94 63.46
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5. retro_ocun_1081 57.52 52.88
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Download FASTA sequences of all ENSOCUG00000005679 retrocopies