RetrogeneDB ID: | retro_mmur_135 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1412:107924..108316(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMICG00000007657 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.55 % |
Parental protein coverage: | 60.99 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | YDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARA-LPFWNEEIVPQIKEGKRVLIAAHG |
Y.V.....E.DH.FYSN...D..Y.....DQ..SCE.L..T.A...LPF.NE.IV....E...VLI.... | |
Retrocopy | YEVQALVKESDHSFYSNNNEDHHYI----DQPSSCERLNSTNA*S<LPFRNE*IVYR*-EVNWVLIVDYD |
Parental | NSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK |
.SL...V..LE.LS.E.I..L.LP..IPIV.ELDKNLK.IKPM.FLGD.ETV..A...VAAQ.K.KK | |
Retrocopy | KSL*ETVEYLECLSVETIIVLKLPGAIPIVHELDKNLKSIKPMHFLGDQETVGAARGIVAAQDKVKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012697 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009062 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016575 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006844 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000002467 | 1 retrocopy | |
Homo sapiens | ENSG00000171314 | 12 retrocopies | |
Gorilla gorilla | ENSGGOG00000028602 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015979 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007657 | 1 retrocopy |
retro_mmur_135 ,
|
Macaca mulatta | ENSMMUG00000020027 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004242 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005679 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000002530 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000050585 | 7 retrocopies | |
Tupaia belangeri | ENSTBEG00000005913 | 5 retrocopies | |
Drosophila melanogaster | FBgn0014869 | 1 retrocopy |