RetrogeneDB ID: | retro_ptro_594 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:18279664..18280074(-) | ||
Located in intron of: | ENSPTRG00000003424 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSPTRG00000013529 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 86.23 % |
Parental protein coverage: | 55.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKE-MQPTHPIRLGLALNFSV |
...Q.....FYLKMKGDYFRYLSEVASGDNKQTTV.NSQQAYQEAFEISKKE.MQPTHP..LGLALNFSV | |
Retrocopy | SCSQFYTTIFYLKMKGDYFRYLSEVASGDNKQTTVWNSQQAYQEAFEISKKEEMQPTHPV*LGLALNFSV |
Parental | FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLR-DNLTLWTSENQGDEGDAGEGE |
FYYEILNSPEKACSLAKT.FDEAI.ELDTLNEESYKDSTLIMQLL..D..TLWTSENQ.DEGDAGEGE | |
Retrocopy | FYYEILNSPEKACSLAKTVFDEAITELDTLNEESYKDSTLIMQLLG<DSVTLWTSENQEDEGDAGEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .30 RPM | 344 .89 RPM |
SRP007412_cerebellum | 0 .25 RPM | 282 .74 RPM |
SRP007412_heart | 0 .06 RPM | 140 .57 RPM |
SRP007412_kidney | 0 .05 RPM | 222 .42 RPM |
SRP007412_liver | 0 .03 RPM | 119 .81 RPM |
SRP007412_testis | 0 .11 RPM | 83 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_692 |