RetrogeneDB ID: | retro_ptro_1686 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:127219237..127219958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSPTRG00000013529 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 83.06 % |
Parental protein coverage: | 97.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTER |
DK.ELVQKAKLAEQAE.YDDMAA.MK.VT.QG.ELSNEERNLLSVAYKNVVGARRSSWRV.SSIEQKTE. | |
Retrocopy | DKNELVQKAKLAEQAEQYDDMAACMKSVTKQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEG |
Parental | NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTT |
.EKKQQM..E.REKIE.EL.DICNDVL.LL.K.LIPNA.Q.ESKVFYLKMKGDY.RYL.EV..GD.K... | |
Retrocopy | AEKKQQMAREHREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLTEVTAGDDKIGI |
Parental | VSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV-FYYEILNSPEKACSLAKTAFDEAIAELDTLNEES |
V..SQQAYQEAFEISKKEMQPTHP.RLGLALNF.V..Y.EILNSPEKAC.LAKTAFDEAIAELDTL.EES | |
Retrocopy | VDQSQQAYQEAFEISKKEMQPTHPVRLGLALNFCV>YY-EILNSPEKACCLAKTAFDEAIAELDTLSEES |
Parental | YKDSTLIMQLLRDNLTLWTSENQGDEGDAGEG |
YKDS.LIMQLLRDNLTLWTS..QGDE..AGEG | |
Retrocopy | YKDSMLIMQLLRDNLTLWTSDTQGDEVEAGEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 6 .49 RPM | 344 .89 RPM |
SRP007412_cerebellum | 2 .58 RPM | 282 .74 RPM |
SRP007412_heart | 0 .79 RPM | 140 .57 RPM |
SRP007412_kidney | 0 .97 RPM | 222 .42 RPM |
SRP007412_liver | 0 .75 RPM | 119 .81 RPM |
SRP007412_testis | 2 .11 RPM | 83 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1754 |
Pongo abelii | retro_pabe_2047 |