RetrogeneDB ID: | retro_ptro_3125 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:73003940..73004330(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSPTRG00000013529 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 68.46 % |
Parental protein coverage: | 52.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEIL |
ESKVFYLK.KG.Y.....EV..GD.K...V..SQQAY.EAFEISKKEMQPT.P.RLGLA.NFSVF.YEIL | |
Retrocopy | ESKVFYLKIKGHYYCFVAEVSAGDDKKEIVDQSQQAYREAFEISKKEMQPTYPTRLGLAFNFSVFHYEIL |
Parental | NSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEG |
NSP.KACSL..TAFD.AIAE.DT...E.YKDST....LLR..LTL.TS..QGDE..A.EG | |
Retrocopy | NSPYKACSLTRTAFDKAIAEFDTFSTEPYKDSTVVLKLLRNGLTLQTSDTQGDEAEAREG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 344 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 282 .74 RPM |
SRP007412_heart | 0 .00 RPM | 140 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 222 .42 RPM |
SRP007412_liver | 0 .00 RPM | 119 .81 RPM |
SRP007412_testis | 0 .00 RPM | 83 .89 RPM |