RetrogeneDB ID: | retro_ptro_1697 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:142291878..142292427(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSPTRG00000008521 | ||
Aliases: | None | ||
Description: | Pan troglodytes tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (YWHAE), mRNA. [Source:RefSeq mRNA;Acc:NM_001246368] |
Percent Identity: | 94.54 % |
Parental protein coverage: | 71.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE |
.DDREDLVY.AKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARR.SWRIISSIEQKE | |
Retrocopy | VDDREDLVYRAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRTSWRIISSIEQKE |
Parental | ENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGND |
ENKGGEDKL.MIREY.QMVETELKLICCDILDVLDKHLI.AANTGESKVFYYKMKGDYHRYLAEFATGND | |
Retrocopy | ENKGGEDKLEMIREYQQMVETELKLICCDILDVLDKHLIAAANTGESKVFYYKMKGDYHRYLAEFATGND |
Parental | RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYE |
RKEAA.NS.VAYKAASDIAMTELPP.HPIRLGLALNFS.FYYE | |
Retrocopy | RKEAAKNSIVAYKAASDIAMTELPPAHPIRLGLALNFSIFYYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .64 RPM | 546 .12 RPM |
SRP007412_cerebellum | 0 .36 RPM | 571 .39 RPM |
SRP007412_heart | 0 .50 RPM | 404 .14 RPM |
SRP007412_kidney | 0 .26 RPM | 351 .38 RPM |
SRP007412_liver | 0 .26 RPM | 235 .52 RPM |
SRP007412_testis | 0 .95 RPM | 787 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2324 |
Pongo abelii | retro_pabe_2107 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005664 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012056 | 2 retrocopies | |
Homo sapiens | ENSG00000108953 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016840 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010174 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000656 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006155 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007769 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000008521 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000011641 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013529 | 12 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005084 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000010288 | 3 retrocopies |