RetrogeneDB - Parental gene ENSPTRG00000012029 details

							
>ENSPTRG00000012029
ATGAGCAAAGCTCACCCTCCCGAGTTGAAAAAATTTATGGACAAGAAGTTATCATTGAAATTAAATGGTGGCAGACATGT

CCAAGGAATATTGCGGGGATTTGATCCCTTTATGAACCTTGTGATAGATGAATGTGTGGAGATGGCGACTAGTGGACAAC

AGAACAATATTGGAATGGTGGTAATACGAGGAAATAGTATCATCATGTTGGAAGCCTTGGAACGAGTATAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	6 .95 RPM
SRP007412_cerebellum	5 .84 RPM
SRP007412_heart	14 .17 RPM
SRP007412_kidney	16 .58 RPM
SRP007412_liver	15 .06 RPM
SRP007412_testis	29 .40 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Canis familiaris	ENSCAFG00000032595	ortholog_one2one	14 retrogenes	retro_cfam_1060, retro_cfam_1458, retro_cfam_1871, retro_cfam_1984, retro_cfam_2210, retro_cfam_279, retro_cfam_306, retro_cfam_313, retro_cfam_407, retro_cfam_505, retro_cfam_817, retro_cfam_956, retro_cfam_967, retro_cfam_991,
Callithrix jacchus	ENSCJAG00000019313	possible_ortholog	18 retrogenes	retro_cjac_1034, retro_cjac_1227, retro_cjac_1398, retro_cjac_149, retro_cjac_1897, retro_cjac_223, retro_cjac_2419, retro_cjac_2431, retro_cjac_2658, retro_cjac_2795, retro_cjac_3246, retro_cjac_3314, retro_cjac_4078, retro_cjac_547, retro_cjac_763, retro_cjac_796, retro_cjac_897, retro_cjac_998,
Cavia porcellus	ENSCPOG00000025022	ortholog_one2one	6 retrogenes	retro_cpor_1323, retro_cpor_145, retro_cpor_531, retro_cpor_573, retro_cpor_673, retro_cpor_843,
Equus caballus	ENSECAG00000019989	ortholog_one2one	5 retrogenes	retro_ecab_1080, retro_ecab_197, retro_ecab_376, retro_ecab_410, retro_ecab_693,
Felis catus	ENSFCAG00000008118	possible_ortholog	8 retrogenes	retro_fcat_1006, retro_fcat_1092, retro_fcat_1248, retro_fcat_1467, retro_fcat_1893, retro_fcat_562, retro_fcat_82, retro_fcat_90,
Homo sapiens	ENSG00000143977	ortholog_one2one	12 retrogenes	retro_hsap_1187, retro_hsap_1267, retro_hsap_1413, retro_hsap_1784, retro_hsap_1943, retro_hsap_1968, retro_hsap_2139, retro_hsap_2241, retro_hsap_2392, retro_hsap_296, retro_hsap_3786, retro_hsap_810,
Loxodonta africana	ENSLAFG00000002301	ortholog_one2one	3 retrogenes	retro_lafr_428, retro_lafr_559, retro_lafr_887,
Microcebus murinus	ENSMICG00000015369	ortholog_one2one	10 retrogenes	retro_mmur_1419, retro_mmur_1468, retro_mmur_1550, retro_mmur_265, retro_mmur_395, retro_mmur_59, retro_mmur_595, retro_mmur_625, retro_mmur_735, retro_mmur_901,
Myotis lucifugus	ENSMLUG00000026490	possible_ortholog	3 retrogenes	retro_mluc_273, retro_mluc_46, retro_mluc_731,
Macaca mulatta	ENSMMUG00000007961	possible_ortholog	3 retrogenes	retro_mmul_1021, retro_mmul_2048, retro_mmul_300,
Monodelphis domestica	ENSMODG00000011528	ortholog_one2one	1 retrogene	retro_mdom_1945,
Mustela putorius furo	ENSMPUG00000007221	ortholog_one2one	2 retrogenes	retro_mputfur_100, retro_mputfur_114,
Mus musculus	ENSMUSG00000057278	ortholog_one2one	1 retrogene	retro_mmus_186,
Nomascus leucogenys	ENSNLEG00000010182	ortholog_one2one	1 retrogene	retro_nleu_93,
Oryctolagus cuniculus	ENSOCUG00000011214	possible_ortholog	2 retrogenes	retro_ocun_1032, retro_ocun_57,
Otolemur garnettii	ENSOGAG00000015300	ortholog_one2one	13 retrogenes	retro_ogar_1138, retro_ogar_1691, retro_ogar_1982, retro_ogar_2533, retro_ogar_2626, retro_ogar_2696, retro_ogar_2787, retro_ogar_3149, retro_ogar_3386, retro_ogar_351, retro_ogar_638, retro_ogar_745, retro_ogar_836,
Pongo abelii	ENSPPYG00000012324	ortholog_one2one	14 retrogenes	retro_pabe_1054, retro_pabe_1078, retro_pabe_1079, retro_pabe_1169, retro_pabe_1188, retro_pabe_1465, retro_pabe_1603, retro_pabe_1728, retro_pabe_1929, retro_pabe_2041, retro_pabe_2160, retro_pabe_3093, retro_pabe_495, retro_pabe_95,
Pteropus vampyrus	ENSPVAG00000004855	ortholog_one2one	3 retrogenes	retro_pvam_612, retro_pvam_613, retro_pvam_666,
Rattus norvegicus	ENSRNOG00000016507	ortholog_one2many	1 retrogene	retro_rnor_409,
Ictidomys tridecemlineatus	ENSSTOG00000008654	ortholog_one2many	11 retrogenes	retro_itri_1116, retro_itri_1260, retro_itri_128, retro_itri_1395, retro_itri_1871, retro_itri_280, retro_itri_353, retro_itri_572, retro_itri_589, retro_itri_910, retro_itri_947,
Tupaia belangeri	ENSTBEG00000017381	possible_ortholog	66 retrogenes	retro_tbel_1010, retro_tbel_1076, retro_tbel_1114, retro_tbel_1133, retro_tbel_1161, retro_tbel_1164, retro_tbel_1174, retro_tbel_121, retro_tbel_1288, retro_tbel_1448, retro_tbel_1461, retro_tbel_147, retro_tbel_1478, retro_tbel_149, retro_tbel_164, retro_tbel_1654, retro_tbel_1887, retro_tbel_1939, retro_tbel_1944, retro_tbel_1965, retro_tbel_1966, retro_tbel_1997, retro_tbel_2001, retro_tbel_2143, retro_tbel_217, retro_tbel_236, retro_tbel_239, retro_tbel_241, retro_tbel_2454, retro_tbel_2462, retro_tbel_2572, retro_tbel_2664, retro_tbel_2941, retro_tbel_3098, retro_tbel_3379, retro_tbel_3385, retro_tbel_343, retro_tbel_347, retro_tbel_3495, retro_tbel_3559, retro_tbel_3603, retro_tbel_362, retro_tbel_3699, retro_tbel_3980, retro_tbel_3981, retro_tbel_3983, retro_tbel_4010, retro_tbel_4011, retro_tbel_4177, retro_tbel_4196, retro_tbel_43, retro_tbel_4399, retro_tbel_4442, retro_tbel_4505, retro_tbel_4549, retro_tbel_4609, retro_tbel_465, retro_tbel_489, retro_tbel_697, retro_tbel_726, retro_tbel_736, retro_tbel_805, retro_tbel_921, retro_tbel_93, retro_tbel_936, retro_tbel_947,
Tarsius syrichta	ENSTSYG00000005729	ortholog_one2one	11 retrogenes	retro_tsyr_1202, retro_tsyr_134, retro_tsyr_1440, retro_tsyr_1592, retro_tsyr_1747, retro_tsyr_2038, retro_tsyr_222, retro_tsyr_287, retro_tsyr_322, retro_tsyr_431, retro_tsyr_698,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ptro_243	98.65	97.37	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ptro_563	72.37	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ptro_814	68.42	98.68	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ptro_867	73.68	98.68	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ptro_967	85.33	97.37	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ptro_1194	85.90	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ptro_1297	96.05	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ptro_1314	94.59	97.37	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ptro_1565	93.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ptro_1585	80.00	97.37	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ptro_2568	90.67	98.68	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPTRG00000012029 retrocopies

Parental gene:	SNRPG, ENSPTRG00000012029
Aliases:	None
Description:	None
Organism:	*Chimpanzee (Pan troglodytes)*
Coordinates:	2A:71222527..71234867(-)

Parental gene:

SNRPG, ENSPTRG00000012029