RetrogeneDB ID: | retro_pabe_1465 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:59042593..59042822(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPG | ||
Ensembl ID: | ENSPPYG00000012324 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163] |
Percent Identity: | 87.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSKAHPPELKKFMDKKLSLK-LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIM |
MSKA.PP.LK.FMDKKLSLK.LNGGR.VQGIL.GFDPFMNLVID.CVEMATSGQQNNIGMVV.R.NSIIM | |
Retrocopy | MSKAYPPKLKTFMDKKLSLK>LNGGRYVQGILWGFDPFMNLVID*CVEMATSGQQNNIGMVVMRCNSIIM |
Parental | LEALERV |
LEALE.V | |
Retrocopy | LEALEQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .16 RPM |
SRP007412_heart | 0 .00 RPM | 6 .86 RPM |
SRP007412_kidney | 0 .03 RPM | 11 .10 RPM |
SRP007412_liver | 0 .03 RPM | 8 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1784 |