RetrogeneDB - Parental gene ENSCJAG00000019313 details

                            
>ENSCJAG00000019313
ATGAGCAAAGCTCACCCTCCCGAGTTGAAAAAATTTATGGACAAGAAGTTATCATTGAAATTAAATGGTGGCAGACATGT

CCAAGGAATATTGCGGGGATTTGATCCCTTTATGAATCTTGTGATAGATGAATGTGTGGAGATGGCGACTAGTGGACAAC

AGAACAATATTGGAATGGTGGACAACATACCTAATAAAGTGGTAAGCCCAAAGTTCTTGAAAAAGGTGAACCAAAAAGGA

CAACTTAACTTTTAG

Library	Parental gene expression (RPM)
SRP051959_colon	9 .05 RPM
SRP051959_heart	7 .89 RPM
SRP051959_kidney	12 .20 RPM
SRP051959_liver	9 .44 RPM
SRP051959_lung	8 .25 RPM
SRP051959_lymph_node	9 .00 RPM
SRP051959_skeletal_muscle	8 .12 RPM
SRP051959_spleen	9 .37 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000016000	ortholog_one2one	9 retrogenes	retro_amel_1577, retro_amel_1618, retro_amel_1671, retro_amel_1795, retro_amel_186, retro_amel_466, retro_amel_563, retro_amel_747, retro_amel_944,
Canis familiaris	ENSCAFG00000032595	possible_ortholog	14 retrogenes	retro_cfam_1060, retro_cfam_1458, retro_cfam_1871, retro_cfam_1984, retro_cfam_2210, retro_cfam_279, retro_cfam_306, retro_cfam_313, retro_cfam_407, retro_cfam_505, retro_cfam_817, retro_cfam_956, retro_cfam_967, retro_cfam_991,
Choloepus hoffmanni	ENSCHOG00000000130	possible_ortholog	3 retrogenes	retro_chof_2006, retro_chof_214, retro_chof_284,
Cavia porcellus	ENSCPOG00000025022	possible_ortholog	6 retrogenes	retro_cpor_1323, retro_cpor_145, retro_cpor_531, retro_cpor_573, retro_cpor_673, retro_cpor_843,
Dasypus novemcinctus	ENSDNOG00000019446	possible_ortholog	18 retrogenes	retro_dnov_1104, retro_dnov_1138, retro_dnov_1150, retro_dnov_1207, retro_dnov_1232, retro_dnov_1297, retro_dnov_221, retro_dnov_2273, retro_dnov_2295, retro_dnov_249, retro_dnov_269, retro_dnov_272, retro_dnov_435, retro_dnov_518, retro_dnov_520, retro_dnov_564, retro_dnov_647, retro_dnov_883,
Dipodomys ordii	ENSDORG00000005623	ortholog_one2one	2 retrogenes	retro_dord_253, retro_dord_483,
Equus caballus	ENSECAG00000019989	possible_ortholog	5 retrogenes	retro_ecab_1080, retro_ecab_197, retro_ecab_376, retro_ecab_410, retro_ecab_693,
Echinops telfairi	ENSETEG00000010028	possible_ortholog	12 retrogenes	retro_etel_1019, retro_etel_131, retro_etel_1519, retro_etel_1999, retro_etel_2026, retro_etel_329, retro_etel_363, retro_etel_407, retro_etel_428, retro_etel_520, retro_etel_648, retro_etel_739,
Felis catus	ENSFCAG00000008118	possible_ortholog	8 retrogenes	retro_fcat_1006, retro_fcat_1092, retro_fcat_1248, retro_fcat_1467, retro_fcat_1893, retro_fcat_562, retro_fcat_82, retro_fcat_90,
Homo sapiens	ENSG00000143977	possible_ortholog	12 retrogenes	retro_hsap_1187, retro_hsap_1267, retro_hsap_1413, retro_hsap_1784, retro_hsap_1943, retro_hsap_1968, retro_hsap_2139, retro_hsap_2241, retro_hsap_2392, retro_hsap_296, retro_hsap_3786, retro_hsap_810,
Gorilla gorilla	ENSGGOG00000022169	ortholog_one2one	3 retrogenes	retro_ggor_1413, retro_ggor_1672, retro_ggor_664,
Loxodonta africana	ENSLAFG00000002301	ortholog_one2many	3 retrogenes	retro_lafr_428, retro_lafr_559, retro_lafr_887,
Microcebus murinus	ENSMICG00000015369	possible_ortholog	10 retrogenes	retro_mmur_1419, retro_mmur_1468, retro_mmur_1550, retro_mmur_265, retro_mmur_395, retro_mmur_59, retro_mmur_595, retro_mmur_625, retro_mmur_735, retro_mmur_901,
Myotis lucifugus	ENSMLUG00000026490	possible_ortholog	3 retrogenes	retro_mluc_273, retro_mluc_46, retro_mluc_731,
Macaca mulatta	ENSMMUG00000007961	possible_ortholog	3 retrogenes	retro_mmul_1021, retro_mmul_2048, retro_mmul_300,
Monodelphis domestica	ENSMODG00000011528	ortholog_one2many	1 retrogene	retro_mdom_1945,
Mustela putorius furo	ENSMPUG00000007221	possible_ortholog	2 retrogenes	retro_mputfur_100, retro_mputfur_114,
Mus musculus	ENSMUSG00000057278	possible_ortholog	1 retrogene	retro_mmus_186,
Nomascus leucogenys	ENSNLEG00000010182	possible_ortholog	1 retrogene	retro_nleu_93,
Oryctolagus cuniculus	ENSOCUG00000011214	ortholog_one2one	2 retrogenes	retro_ocun_1032, retro_ocun_57,
Otolemur garnettii	ENSOGAG00000015300	possible_ortholog	13 retrogenes	retro_ogar_1138, retro_ogar_1691, retro_ogar_1982, retro_ogar_2533, retro_ogar_2626, retro_ogar_2696, retro_ogar_2787, retro_ogar_3149, retro_ogar_3386, retro_ogar_351, retro_ogar_638, retro_ogar_745, retro_ogar_836,
Ochotona princeps	ENSOPRG00000001093	ortholog_one2one	6 retrogenes	retro_opri_290, retro_opri_330, retro_opri_596, retro_opri_599, retro_opri_757, retro_opri_823,
Pongo abelii	ENSPPYG00000012324	possible_ortholog	14 retrogenes	retro_pabe_1054, retro_pabe_1078, retro_pabe_1079, retro_pabe_1169, retro_pabe_1188, retro_pabe_1465, retro_pabe_1603, retro_pabe_1728, retro_pabe_1929, retro_pabe_2041, retro_pabe_2160, retro_pabe_3093, retro_pabe_495, retro_pabe_95,
Pan troglodytes	ENSPTRG00000012029	possible_ortholog	11 retrogenes	retro_ptro_1194, retro_ptro_1297, retro_ptro_1314, retro_ptro_1565, retro_ptro_1585, retro_ptro_243, retro_ptro_2568, retro_ptro_563, retro_ptro_814, retro_ptro_867, retro_ptro_967,
Pteropus vampyrus	ENSPVAG00000004855	possible_ortholog	3 retrogenes	retro_pvam_612, retro_pvam_613, retro_pvam_666,
Rattus norvegicus	ENSRNOG00000016507	possible_ortholog	1 retrogene	retro_rnor_409,
Sus scrofa	ENSSSCG00000024776	possible_ortholog	1 retrogene	retro_sscr_907,
Ictidomys tridecemlineatus	ENSSTOG00000008654	possible_ortholog	11 retrogenes	retro_itri_1116, retro_itri_1260, retro_itri_128, retro_itri_1395, retro_itri_1871, retro_itri_280, retro_itri_353, retro_itri_572, retro_itri_589, retro_itri_910, retro_itri_947,
Tupaia belangeri	ENSTBEG00000017381	possible_ortholog	66 retrogenes	retro_tbel_1010, retro_tbel_1076, retro_tbel_1114, retro_tbel_1133, retro_tbel_1161, retro_tbel_1164, retro_tbel_1174, retro_tbel_121, retro_tbel_1288, retro_tbel_1448, retro_tbel_1461, retro_tbel_147, retro_tbel_1478, retro_tbel_149, retro_tbel_164, retro_tbel_1654, retro_tbel_1887, retro_tbel_1939, retro_tbel_1944, retro_tbel_1965, retro_tbel_1966, retro_tbel_1997, retro_tbel_2001, retro_tbel_2143, retro_tbel_217, retro_tbel_236, retro_tbel_239, retro_tbel_241, retro_tbel_2454, retro_tbel_2462, retro_tbel_2572, retro_tbel_2664, retro_tbel_2941, retro_tbel_3098, retro_tbel_3379, retro_tbel_3385, retro_tbel_343, retro_tbel_347, retro_tbel_3495, retro_tbel_3559, retro_tbel_3603, retro_tbel_362, retro_tbel_3699, retro_tbel_3980, retro_tbel_3981, retro_tbel_3983, retro_tbel_4010, retro_tbel_4011, retro_tbel_4177, retro_tbel_4196, retro_tbel_43, retro_tbel_4399, retro_tbel_4442, retro_tbel_4505, retro_tbel_4549, retro_tbel_4609, retro_tbel_465, retro_tbel_489, retro_tbel_697, retro_tbel_726, retro_tbel_736, retro_tbel_805, retro_tbel_921, retro_tbel_93, retro_tbel_936, retro_tbel_947,
Tarsius syrichta	ENSTSYG00000005729	possible_ortholog	11 retrogenes	retro_tsyr_1202, retro_tsyr_134, retro_tsyr_1440, retro_tsyr_1592, retro_tsyr_1747, retro_tsyr_2038, retro_tsyr_222, retro_tsyr_287, retro_tsyr_322, retro_tsyr_431, retro_tsyr_698,
Vicugna pacos	ENSVPAG00000007452	possible_ortholog	10 retrogenes	retro_vpac_182, retro_vpac_196, retro_vpac_25, retro_vpac_290, retro_vpac_295, retro_vpac_352, retro_vpac_42, retro_vpac_59, retro_vpac_591, retro_vpac_641,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_149	96.05	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_223	94.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_547	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_763	93.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_796	87.84	97.37	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_897	93.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_998	82.89	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_1034	89.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_1227	70.67	97.37	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cjac_1398	90.91	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cjac_1897	97.37	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_cjac_2419	97.40	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_cjac_2431	97.40	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_cjac_2658	95.95	96.05	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_cjac_2795	89.61	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_cjac_3246	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_cjac_3314	63.29	100.00	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_cjac_4078	98.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000019313 retrocopies

Parental gene:	ENSCJAG00000019313
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	14:36576368..36588694(+)

Parental gene:

ENSCJAG00000019313