Parental gene:

HMGB1, ENSPVAG00000001431

Aliases:None
Description:high mobility group box 1 [Source:HGNC Symbol;Acc:4983]
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_5325:9266..11630(+)


>ENSPVAG00000001431
ATGGGCAAAGGAGATCCTAAGAAGCCCAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA
CAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGACATGGCAAAAGCGGACAAGGCCCGCTACGAAAGAGAAATGAAAACTTATATCCCC
CCCAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCGTCGGCCCTTTTCATGTTTTGTGA
GTATCGCCCCAAATCCAAAGGAGAGCACCCCGGCCGGTCCATTGGTGACGTCGCGAAGAAGCTGGGAGAGATGTGGAATA
ACACGGCTGCAGACGACCAGCCTTACGAAAAGAAGGCTGCCAAGCTGAAGGAGAAATACGGAAAGGATATCGCCGCATAC
CGAGCTAAAGGAAAGCCTGACGCTGCGAAAAAGGGCGTCGTCAAGGCCGAGAAGAGCAAGAAGAAGAAGGAGGAGGAGGA
GGACGAGGAGGACGAAGAGGAGGAGGAGGAGGACGAGGACGAGGAGGATGAGGACGAGGATGAGGAGGAGGACGACGAAT
GA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Homo sapiens ENSG00000189403 ortholog_one2one 37 retrogenes
retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
retro_ggor_1057, retro_ggor_1212, retro_ggor_1421, retro_ggor_1596, retro_ggor_1637, retro_ggor_1662, retro_ggor_1735, retro_ggor_1777, retro_ggor_1856, retro_ggor_1951, retro_ggor_1977, retro_ggor_213, retro_ggor_2422, retro_ggor_2441, retro_ggor_2478, retro_ggor_259, retro_ggor_2897, retro_ggor_3013, retro_ggor_388, retro_ggor_448, retro_ggor_483, retro_ggor_753, retro_ggor_964,
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
retro_meug_1591, retro_meug_825,
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
retro_mdom_1088, retro_mdom_1144, retro_mdom_1228, retro_mdom_1689, retro_mdom_1727, retro_mdom_1819, retro_mdom_2007, retro_mdom_2024, retro_mdom_3, retro_mdom_434, retro_mdom_548, retro_mdom_72, retro_mdom_760, retro_mdom_958,
Ochotona princeps ENSOPRG00000003507 ortholog_one2one 8 retrogenes
retro_opri_1030, retro_opri_1150, retro_opri_1209, retro_opri_140, retro_opri_279, retro_opri_42, retro_opri_553, retro_opri_706,
Procavia capensis ENSPCAG00000002201 ortholog_one2one 2 retrogenes
retro_pcap_256, retro_pcap_432,
Pongo abelii ENSPPYG00000005546 ortholog_one2one 35 retrogenes
retro_pabe_1023, retro_pabe_1125, retro_pabe_1254, retro_pabe_1334, retro_pabe_1500, retro_pabe_159, retro_pabe_1724, retro_pabe_1831, retro_pabe_1973, retro_pabe_1997, retro_pabe_2070, retro_pabe_2089, retro_pabe_2194, retro_pabe_222, retro_pabe_2313, retro_pabe_2362, retro_pabe_2406, retro_pabe_2444, retro_pabe_264, retro_pabe_2732, retro_pabe_2751, retro_pabe_2752, retro_pabe_2777, retro_pabe_2953, retro_pabe_2966, retro_pabe_3008, retro_pabe_3365, retro_pabe_3523, retro_pabe_3684, retro_pabe_3757, retro_pabe_452, retro_pabe_511, retro_pabe_522, retro_pabe_761, retro_pabe_762,
Pteropus vampyrus ENSPVAG00000000219 other_paralog 1 retrogene
retro_pvam_356,
Pteropus vampyrus ENSPVAG00000014656 other_paralog 1 retrogene
retro_pvam_872,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
retro_rnor_421,
Sorex araneus ENSSARG00000004470 ortholog_one2one 14 retrogenes
retro_sara_131, retro_sara_182, retro_sara_259, retro_sara_293, retro_sara_302, retro_sara_342, retro_sara_378, retro_sara_402, retro_sara_47, retro_sara_564, retro_sara_576, retro_sara_613, retro_sara_655, retro_sara_765,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_154 69.61 83.10
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2. retro_pvam_429 69.35 91.08
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3. retro_pvam_508 68.67 75.12
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4. retro_pvam_774 67.13 66.67
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5. retro_pvam_960 63.83 64.79
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6. retro_pvam_1156 59.06 68.08
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Download FASTA sequences of all ENSPVAG00000001431 retrocopies