RetrogeneDB ID: | retro_pabe_222 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:19934206..19934736(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.9 % |
Parental protein coverage: | 82.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
M.KGDPKKPRGKMSS.AFFVQ.C.EEH.KK.P.A.VN.SEF..KCSE.WKT..A..KGKFEDMAK.DK.. | |
Retrocopy | MVKGDPKKPRGKMSSSAFFVQACQEEHRKKYPAAPVNSSEFAQKCSEKWKTIHANKKGKFEDMAKTDKTC |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAAD |
YEREMK..I..KGE.K.KFK.PNAPKRPPSAFFLFCSEY.P.I.GEHP.GLSIGDVAKKLGEMWNNTAAD | |
Retrocopy | YEREMKSHITSKGE*KNKFKNPNAPKRPPSAFFLFCSEYHPRITGEHP<GLSIGDVAKKLGEMWNNTAAD |
Parental | DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVK |
DKQ.YEKKAAKLKE.Y.KDIAAY.AKGKPDAAKKGVVK | |
Retrocopy | DKQAYEKKAAKLKEEYRKDIAAY*AKGKPDAAKKGVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .54 RPM |
SRP007412_heart | 0 .00 RPM | 71 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 98 .31 RPM |
SRP007412_liver | 0 .00 RPM | 70 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_525 |
Gorilla gorilla | retro_ggor_483 |