Parental gene:

HMGB1, ENSCAFG00000006597

Aliases:HMGB1, HMG1
Description:Canis lupus familiaris high mobility group box 1 (HMGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002937]
Organism:Dog (Canis familiaris)
Coordinates:25:9430485..9558144(+)


>ENSCAFG00000006597
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGAGAGGAGCA
CAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAAAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGACATGGCTAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCC
CCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCCTCGGCCTTTTTCTTGTTTTGTTC
TGAGTATCGCCCAAAAATCAAAGGAGAGCATCCCGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCTAAGCTGAAGGAAAAATATGAAAAGGATATTGCT
GCGTACCGAGCTAAAGGAAAGCCTGATGCGGCAAAAAAGGGAGTTGTCAAGGCTGAAAAGAGCAAGAAAAAGAAGGAAGA
GGAGGAAGACGAGGAGGATGAAGAGGATGAGGAGGAGGAAGAAGATGAAGAAGATGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 186 .89 RPM
SRP017611_kidney 264 .61 RPM
SRP017611_liver 83 .68 RPM
SRP012049_cerebellum 398 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008880 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000018103 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000028715 other_paralog 1 retrogene
Choloepus hoffmanni ENSCHOG00000002423 ortholog_one2one 16 retrogenes
Callithrix jacchus ENSCJAG00000021615 possible_ortholog 11 retrogenes
Cavia porcellus ENSCPOG00000003985 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000008439 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000004048 possible_ortholog 18 retrogenes
Felis catus ENSFCAG00000000200 possible_ortholog 10 retrogenes
Homo sapiens ENSG00000189403 possible_ortholog 37 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Loxodonta africana ENSLAFG00000000269 ortholog_one2one 4 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Microcebus murinus ENSMICG00000000573 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000007144 possible_ortholog 7 retrogenes
Myotis lucifugus ENSMLUG00000025979 possible_ortholog 17 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Mus musculus ENSMUSG00000066551 possible_ortholog 129 retrogenes
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG00000000720 possible_ortholog 33 retrogenes
Oryctolagus cuniculus ENSOCUG00000021335 possible_ortholog 16 retrogenes
Otolemur garnettii ENSOGAG00000003205 possible_ortholog 104 retrogenes
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Otolemur garnettii ENSOGAG00000032147 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000003507 possible_ortholog 8 retrogenes
Procavia capensis ENSPCAG00000002201 possible_ortholog 2 retrogenes
Pongo abelii ENSPPYG00000005546 possible_ortholog 35 retrogenes
Pteropus vampyrus ENSPVAG00000001431 possible_ortholog 6 retrogenes
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
Sus scrofa ENSSSCG00000009327 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000000443 possible_ortholog 19 retrogenes
Tarsius syrichta ENSTSYG00000006328 possible_ortholog 7 retrogenes
Tursiops truncatus ENSTTRG00000010327 possible_ortholog 8 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_242 62.75 67.91
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_280 90.86 85.58
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cfam_467 86.63 79.07
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cfam_495 85.71 65.12
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_cfam_521 70.27 51.16
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_cfam_528 69.46 93.49
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_cfam_1088 91.03 67.44
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_cfam_1102 66.67 84.65
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_cfam_1387 67.39 82.79
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_cfam_1628 57.02 55.81
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_cfam_1765 88.40 84.19
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_cfam_1831 87.43 83.26
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_cfam_1980 59.65 52.09
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSCAFG00000006597 retrocopies