RetrogeneDB ID: | retro_pabe_1254 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:55574548..55574927(+) | ||
Located in intron of: | ENSPPYG00000006512 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.73 % |
Parental protein coverage: | 60.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE |
K.DPKKPRGKMSSYAFFVQT.R.........ASVNFSEFSKKCSERWK..SAKE.GK.EDMAK.DK..Y. | |
Retrocopy | KEDPKKPRGKMSSYAFFVQTSRRRTRSS-THASVNFSEFSKKCSERWKAISAKENGKSEDMAKGDKDGY* |
Parental | REMKTYIPPKGETKKKFKD-PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW |
RE..TYIPPK.ET.KKF.D.PN.PKR.PS..FLFC.EY.PKI.GE.P.LSIGDV.KKLG.MW | |
Retrocopy | RE--TYIPPKEET-KKFRD>PNVPKRAPSV-FLFCPEYCPKI*GEYPNLSIGDVPKKLGKMW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 108 .09 RPM |
SRP007412_cerebellum | 0 .12 RPM | 110 .54 RPM |
SRP007412_heart | 0 .03 RPM | 71 .83 RPM |
SRP007412_kidney | 0 .03 RPM | 98 .31 RPM |
SRP007412_liver | 0 .03 RPM | 70 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1504 |