RetrogeneDB ID: | retro_pvam_154 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1669:136775..137310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSPVAG00000001431 | ||
Aliases: | None | ||
Description: | high mobility group box 1 [Source:HGNC Symbol;Acc:4983] |
Percent Identity: | 69.61 % |
Parental protein coverage: | 83.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE |
SYAFFV.TC.EEHKKK.PDASV.FSEFSKKCSE.WKTMSAKEKG.F.DM.KA..A..E.EMKTYI.PKGE | |
Retrocopy | SYAFFVHTCQEEHKKKLPDASVSFSEFSKKCSEMWKTMSAKEKGNFKDMTKAERAQ*ESEMKTYILPKGE |
Parental | TKKKFKDPNAPKRPPSALFMFCE-YRPKSKGEHPGRSIGDVAKKLGEMWNNTAADD-QPYE-KKAAKLKE |
.KKKFKDPNAP.R.PSA.F.FC..YRP..K.E....S.GD.AKKLGEM...TAADD.QP...KKAAKLKE | |
Retrocopy | AKKKFKDPNAP*RTPSAFFLFCS<YRPQIKRELLSLSVGDAAKKLGEMQYKTAADDKQPED>KKAAKLKE |
Parental | KYGKDIAAYRAKGKPDAAKKGVVKA-EKSKKKKEEEEDEED |
KY.KDI.A..AKGKPDAA.KGVV.A........EE.ED... | |
Retrocopy | KYKKDIVAN*AKGKPDAAQKGVVEA>XXXXXEAEEDEDDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |