RetrogeneDB ID: | retro_opri_1209 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_957:291108..291630(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOPRG00000003507 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.45 % |
Parental protein coverage: | 80.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQT-CREEHKKKHPDASVNFS-EFSKKCSERWKTMSAKEKGKFEDMAKADK |
MGKGD.KK.RGK.SSYAFFVQT.C.EEHK..HPDASVNFS.EFSKKCSER.KT...KEKG.FED.AKA.K | |
Retrocopy | MGKGDAKKLRGKISSYAFFVQT<CQEEHKEQHPDASVNFS>EFSKKCSERRKTPFTKEKGNFEDTAKAVK |
Parental | ARYEREMKTYIPPKGETKKKFKDPNAPKRPPSDFFLFCSEYRPKIK-EHPGLSIGDMAKKLGEMC-NTAA |
A.YERE.K..I.PKGE.KKKFKDPNAP.RPPS.FFLF.SEY.PKI..EHPGLSI.D.AKKLGE...N.AA | |
Retrocopy | AHYEREIKI*IIPKGEPKKKFKDPNAP*RPPSTFFLFNSEYQPKIQGEHPGLSISDVAKKLGEKWKNSAA |
Parental | DDKQPYEXXXXXXXXXXXXDIAAYRAKGKPDAAKKG |
..KQPY.............D.A.YRAKGKP.A.KKG | |
Retrocopy | NEKQPYKKRADKLEEKNEKDTATYRAKGKPNASKKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |