Parental gene:

ENSPPYG00000005546

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:13_random:10080128..10083967(-)


>ENSPPYG00000005546
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTCGGGAGGAGCA
TAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGATATGGCAAAGGCGGATAAGGCCCGTTATGAAAGAGAAATGAAAACCTATATCCCT
CCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTCTTCCTGTTCTGCTC
TGAGTATCGCCCAAAAATCAAAGGAGAACATCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCTTATGAAAAGAAGGCTGCGAAGCTGAAGGAAAAATACGAAAAGGATATTGCT
GCATATCGAGCTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGATGAAGAGGATGAGGAGGAGGAGGAAGATGAAGAAGATGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 108 .09 RPM
SRP007412_cerebellum 110 .54 RPM
SRP007412_heart 71 .83 RPM
SRP007412_kidney 98 .31 RPM
SRP007412_liver 70 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Choloepus hoffmanni ENSCHOG00000002423 possible_ortholog 16 retrogenes
retro_chof_108, retro_chof_1130, retro_chof_1214, retro_chof_148, retro_chof_164, retro_chof_1708, retro_chof_1741, retro_chof_1764, retro_chof_1797, retro_chof_2155, retro_chof_2484, retro_chof_443, retro_chof_538, retro_chof_591, retro_chof_720, retro_chof_795,
Homo sapiens ENSG00000189403 ortholog_one2many 37 retrogenes
retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
retro_ggor_1057, retro_ggor_1212, retro_ggor_1421, retro_ggor_1596, retro_ggor_1637, retro_ggor_1662, retro_ggor_1735, retro_ggor_1777, retro_ggor_1856, retro_ggor_1951, retro_ggor_1977, retro_ggor_213, retro_ggor_2422, retro_ggor_2441, retro_ggor_2478, retro_ggor_259, retro_ggor_2897, retro_ggor_3013, retro_ggor_388, retro_ggor_448, retro_ggor_483, retro_ggor_753, retro_ggor_964,
Loxodonta africana ENSLAFG00000000269 possible_ortholog 4 retrogenes
retro_lafr_349, retro_lafr_512, retro_lafr_607, retro_lafr_685,
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
retro_meug_1591, retro_meug_825,
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
retro_mdom_1088, retro_mdom_1144, retro_mdom_1228, retro_mdom_1689, retro_mdom_1727, retro_mdom_1819, retro_mdom_2007, retro_mdom_2024, retro_mdom_3, retro_mdom_434, retro_mdom_548, retro_mdom_72, retro_mdom_760, retro_mdom_958,
Ochotona princeps ENSOPRG00000003507 ortholog_one2one 8 retrogenes
retro_opri_1030, retro_opri_1150, retro_opri_1209, retro_opri_140, retro_opri_279, retro_opri_42, retro_opri_553, retro_opri_706,
Procavia capensis ENSPCAG00000002201 ortholog_one2one 2 retrogenes
retro_pcap_256, retro_pcap_432,
Pongo abelii ENSPPYG00000015204 other_paralog 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pongo abelii ENSPPYG00000020818 other_paralog 22 retrogenes
retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pteropus vampyrus ENSPVAG00000001431 ortholog_one2one 6 retrogenes
retro_pvam_1156, retro_pvam_154, retro_pvam_429, retro_pvam_508, retro_pvam_774, retro_pvam_960,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
retro_rnor_421,
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
retro_sara_131, retro_sara_182, retro_sara_259, retro_sara_293, retro_sara_302, retro_sara_342, retro_sara_378, retro_sara_402, retro_sara_47, retro_sara_564, retro_sara_576, retro_sara_613, retro_sara_655, retro_sara_765,
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
retro_shar_136, retro_shar_634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_159 94.79 98.14
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2. retro_pabe_222 80.90 82.33
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3. retro_pabe_264 87.50 73.49
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4. retro_pabe_452 70.00 59.07
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5. retro_pabe_511 69.57 61.40
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6. retro_pabe_522 87.40 59.07
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7. retro_pabe_761 85.60 57.67
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8. retro_pabe_762 86.05 59.53
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9. retro_pabe_1023 54.89 58.14
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10. retro_pabe_1125 72.93 82.79
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11. retro_pabe_1254 72.73 60.93
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12. retro_pabe_1334 65.73 97.21
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13. retro_pabe_1500 89.12 67.91
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14. retro_pabe_1724 70.77 59.53
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15. retro_pabe_1831 96.49 79.07
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16. retro_pabe_1973 67.18 59.53
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17. retro_pabe_1997 86.77 86.98
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18. retro_pabe_2070 72.43 83.26
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19. retro_pabe_2089 82.94 79.07
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20. retro_pabe_2194 88.27 82.79
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21. retro_pabe_2313 70.47 67.91
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22. retro_pabe_2362 68.89 82.33
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23. retro_pabe_2406 69.44 82.33
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24. retro_pabe_2444 74.68 72.56
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25. retro_pabe_2732 67.21 82.79
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26. retro_pabe_2751 81.41 90.70
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27. retro_pabe_2752 81.91 90.70
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28. retro_pabe_2777 62.50 54.88
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29. retro_pabe_2953 82.67 68.37
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30. retro_pabe_2966 87.14 63.72
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31. retro_pabe_3008 73.50 53.02
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32. retro_pabe_3365 73.85 59.53
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33. retro_pabe_3523 87.98 84.19
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34. retro_pabe_3684 71.08 93.95
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35. retro_pabe_3757 76.10 73.95
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Download FASTA sequences of all ENSPPYG00000005546 retrocopies