RetrogeneDB ID: | retro_pabe_2732 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:52577383..52577911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.21 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFEDMAKADKA |
M.KG.P.KPRGKMSSYAFF...C.E.HKK.H.D.SVNFSEFSKKCSER.KT.M..K.KGK.ED.AKADKA | |
Retrocopy | MVKGEP*KPRGKMSSYAFFMKSCQEQHKKQHSDVSVNFSEFSKKCSER*KT>MGSKQKGKSEDRAKADKA |
Parental | R-YEREMKTYIPPKGETKKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW-NNT |
..YEREMKT.IPP.GETKKK..KDP.AP.RPP.A.FLF.....P.IK.EHPGL..GDVAKKLGE...N.. | |
Retrocopy | S>YEREMKTNIPPTGETKKK<IKDPSAPNRPPLA-FLFSCDCHPQIK-EHPGLCVGDVAKKLGEVE>NTA |
Parental | AADDKQPYEKKAAKLK-EKYEKDIAAYRAKGKPDAAKKGVVKA |
A.D.K..YEKK.A.L..E.Y..D.A.Y.AKGKP.A.K.GV.KA | |
Retrocopy | AGD-KKLYEKKPARLN>ENYKEDTAVY*AKGKPRATKRGVIKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .54 RPM |
SRP007412_heart | 0 .00 RPM | 71 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 98 .31 RPM |
SRP007412_liver | 0 .00 RPM | 70 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3317 |
Macaca mulatta | retro_mmul_2079 |