RetrogeneDB ID: | retro_pabe_761 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:49487016..49487387(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.6 % |
Parental protein coverage: | 57.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK |
GKFEDMAKADKA.Y.REMKTYIPPKGETKKKFKDPNAPK.PP.AFFL...EY.PKIKGE.PGLSIGDVAK | |
Retrocopy | GKFEDMAKADKACYKREMKTYIPPKGETKKKFKDPNAPKKPPWAFFLYFAEYGPKIKGERPGLSIGDVAK |
Parental | KLGEMWNNTAADDKQPYEKKAA-KLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS |
KLGEMWNNTAAD.KQPYEK..A..LKEKYEKDIAAYRAKGK.D.AK.GVVKA.KS | |
Retrocopy | KLGEMWNNTAADEKQPYEKRSA<ELKEKYEKDIAAYRAKGKHDEAKNGVVKAVKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .54 RPM |
SRP007412_heart | 0 .00 RPM | 71 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 98 .31 RPM |
SRP007412_liver | 0 .00 RPM | 70 .75 RPM |