RetrogeneDB ID: | retro_pcap_256 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_22281:12374..12751(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSPCAG00000002201 | ||
Aliases: | None | ||
Description: | high mobility group box 1 [Source:HGNC Symbol;Acc:4983] |
Percent Identity: | 66.14 % |
Parental protein coverage: | 58.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGD..KP.GKM...AFF.QTC.EEHKKKH.D.S..F...SKKCSERW.TM.AKEK.KFE...K..K.. | |
Retrocopy | MGKGDTNKPWGKMPLCAFFMQTCLEEHKKKHSDSSFSFTKLSKKCSERWNTMPAKEKSKFEHVVKSSKSH |
Parental | YEREMKTYIPPKGE-TKKFKDPNAPKRPPSAFFLFCYEYRPKIKGEHPGLSIGDVAK |
Y.RE.K.YIPPKGE...K.KD.NAPKRPPS..FL.C.EYRPKIK.EH.GLS..D..K | |
Retrocopy | YDRETKNYIPPKGE<VRKKKDLNAPKRPPSVAFLSCSEYRPKIKSEHAGLSTEDTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |