Parental gene:

UBA52, ENSPVAG00000024217

Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_1435:129041..130291(+)


>ENSPVAG00000024217
ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCGAGCCCAGTGACACCATTGAAAATGTCAA
AGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCC
GCACTCTCTCAGACTATAATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGGGGCGGCATCATTGAGCCC
TCCCTCCGCCAGCTTGCCCAGAAGTACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCCCGCCTGCATCCCCGTGC
TGTCAACTGCCGGAAGAAGAAGTGTGGCCACACCAACAACCTACGTCCCAAGAAGAAGGTCAAATAA

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000351 ortholog_one2one 3 retrogenes
retro_cpor_1454, retro_cpor_1471, retro_cpor_1502,
Echinops telfairi ENSETEG00000003392 ortholog_one2one 35 retrogenes
retro_etel_1121, retro_etel_113, retro_etel_1165, retro_etel_1229, retro_etel_1520, retro_etel_1521, retro_etel_1598, retro_etel_1618, retro_etel_1623, retro_etel_1644, retro_etel_1657, retro_etel_1707, retro_etel_1709, retro_etel_174, retro_etel_1756, retro_etel_1760, retro_etel_1785, retro_etel_1854, retro_etel_196, retro_etel_2027, retro_etel_2101, retro_etel_2123, retro_etel_2158, retro_etel_2166, retro_etel_268, retro_etel_376, retro_etel_386, retro_etel_406, retro_etel_660, retro_etel_690, retro_etel_70, retro_etel_755, retro_etel_807, retro_etel_843, retro_etel_859,
Gorilla gorilla ENSGGOG00000004630 ortholog_one2one 8 retrogenes
retro_ggor_1021, retro_ggor_1045, retro_ggor_1265, retro_ggor_1835, retro_ggor_2579, retro_ggor_2687, retro_ggor_2782, retro_ggor_905,
Latimeria chalumnae ENSLACG00000008132 ortholog_one2many 1 retrogene
retro_lcha_11,
Macropus eugenii ENSMEUG00000013159 ortholog_one2one 5 retrogenes
retro_meug_1812, retro_meug_1868, retro_meug_441, retro_meug_513, retro_meug_750,
Myotis lucifugus ENSMLUG00000029594 ortholog_one2one 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 ortholog_one2one 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 ortholog_one2one 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Pongo abelii ENSPPYG00000009746 possible_ortholog 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2one 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_211 79.66 92.19
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2. retro_pvam_327 74.03 60.16
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3. retro_pvam_517 62.86 78.91
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4. retro_pvam_528 69.23 60.16
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5. retro_pvam_600 75.00 85.94
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6. retro_pvam_632 77.52 100.00
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7. retro_pvam_655 71.28 72.66
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8. retro_pvam_749 77.69 100.00
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9. retro_pvam_987 61.16 92.97
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10. retro_pvam_994 57.14 100.00
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11. retro_pvam_1029 86.36 68.75
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12. retro_pvam_1102 68.99 96.88
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13. retro_pvam_1146 61.16 92.97
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14. retro_pvam_1164 61.68 82.81
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15. retro_pvam_1320 79.53 99.22
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16. retro_pvam_1325 58.02 98.44
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17. retro_pvam_1361 69.77 100.00
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18. retro_pvam_1434 70.75 82.03
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19. retro_pvam_1447 78.12 100.00
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Download FASTA sequences of all ENSPVAG00000024217 retrocopies